Construct: ORF ccsbBroadEn_08062

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009828.1_s300c1, BRDN0000457232
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PALD1 (27143)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27143 PALD1 phosphatase domain containi... NM_014431.3 99.8% 99.8% 156C>A;422C>T;2286A>G
2 human 27143 PALD1 phosphatase domain containi... XM_011539637.2 99.8% 99.8% 156C>A;422C>T;2286A>G
3 human 27143 PALD1 phosphatase domain containi... XM_011539638.2 99.8% 99.8% 156C>A;422C>T;2286A>G
4 human 27143 PALD1 phosphatase domain containi... XM_017016072.1 99.8% 99.8% 156C>A;422C>T;2286A>G
5 human 27143 PALD1 phosphatase domain containi... XR_945675.2 55% (many diffs)
6 human 27143 PALD1 phosphatase domain containi... XR_001747093.1 47.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2637
ORF length:
2568
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGTACAACG GCCAGCACAG CCCAGCAGAC GGTCTCGGCA GGCACCCCAT
121TTGAGGGCCT ACAGGGCAGT GGCACGATGG ACAGTCGGCA CTCCGTCAGC ATCCACTCCT
181TCCAGAGCAC TAGCTTGCAT AACAGCAAGG CCAAGTCCAT CATACCCAAC AAGGTGGCCC
241CTGTTGTGAT CACGTACAAC TGCAAGGAGG AGTTCCAGAT CCATGATGAG CTGCTCAAGG
301CTCATTACAC GTTGGGCCGG CTCTCGGACA ACACCCCTGA GCACTACCTG GTGCAAGGCC
361GCTACTTCCT GGTGCGGGAT GTCACTGAGA AGATGGATGT GCTGGGCACC GTGGGAAGCT
421GTGGGGCCCC CAACTTCCGG CAGGTGCAGG GTGGGCTCAC TGTGTTCGGC ATGGGACAGC
481CCAGCCTCTT AGGGTTCAGG CGGGTCCTCC AGAAACTCCA GAAGGACGGA CATAGGGAGT
541GTGTCATCTT CTGTGTGCGG GAGGAACCTG TGCTTTTCCT GCGTGCAGAT GAGGACTTTG
601TGTCCTACAC ACCTCGAGAC AAGCAGAACC TTCATGAGAA CCTCCAGGGC CTTGGACCCG
661GGGTCCGGGT GGAGAGCCTG GAGCTGGCCA TCCGGAAAGA GATCCACGAC TTTGCCCAGC
721TGAGCGAGAA CACATACCAT GTGTACCATA ACACCGAGGA CCTGTGGGGG GAGCCCCATG
781CTGTGGCCAT CCATGGTGAG GACGACTTGC ATGTGACGGA GGAGGTGTAC AAGCGGCCCC
841TCTTCCTGCA GCCCACCTAC AGGTACCACC GCCTGCCCCT GCCCGAGCAA GGGAGTCCCC
901TGGAGGCCCA GTTGGACGCC TTTGTCAGTG TTCTCCGGGA GACCCCCAGC CTGCTGCAGC
961TCCGTGATGC CCACGGGCCT CCCCCAGCCC TCGTCTTCAG CTGCCAGATG GGCGTGGGCA
1021GGACCAACCT GGGCATGGTC CTGGGCACCC TCATCCTGCT TCACCGCAGT GGGACCACCT
1081CCCAGCCAGA GGCTGCCCCC ACGCAGGCCA AGCCCCTGCC TATGGAGCAG TTCCAGGTGA
1141TCCAGAGCTT TCTCCGCATG GTGCCCCAGG GAAGGAGGAT GGTGGAAGAG GTGGACAGAG
1201CCATCACTGC CTGTGCCGAG TTGCATGACC TGAAAGAAGT GGTCTTGGAA AACCAGAAGA
1261AGTTAGAAGG TATCCGACCG GAGAGCCCAG CCCAGGGAAG CGGCAGCCGA CACAGCGTCT
1321GGCAGAGGGC GCTGTGGAGC CTGGAGCGAT ACTTCTACCT GATCCTGTTT AACTACTACC
1381TTCATGAGCA GTACCCGCTG GCCTTTGCCC TCAGTTTCAG CCGCTGGCTG TGTGCCCACC
1441CTGAGCTGTA CCGCCTGCCC GTGACGCTGA GCTCAGCAGG CCCTGTGGCT CCGAGGGACC
1501TCATCGCCAG GGGCTCCCTA CGGGAGGACG ATCTGGTCTC CCCGGACGCG CTCAGCACTG
1561TCAGAGAGAT GGATGTGGCC AACTTCCGGC GGGTGCCCCG CATGCCCATC TACGGCACGG
1621CCCAGCCCAG CGCCAAGGCC CTGGGGAGCA TCCTGGCCTA CCTGACGGAC GCCAAGAGGA
1681GGCTGCGGAA GGTTGTCTGG GTGAGCCTTC GGGAGGAGGC CGTGTTGGAG TGTGACGGGC
1741ACACCTACAG CCTGCGGTGG CCTGGGCCCC CTGTGGCTCC TGACCAGCTG GAGACCCTGG
1801AGGCCCAGCT GAAGGCCCAT CTAAGCGAGC CTCCCCCAGG CAAGGAGGGC CCCCTGACCT
1861ACAGGTTCCA GACCTGCCTT ACCATGCAGG AGGTCTTCAG CCAGCACCGC AGGGCCTGTC
1921CTGGCCTCAC CTACCACCGC ATCCCCATGC CGGACTTCTG TGCCCCCCGA GAGGAGGACT
1981TTGACCAGCT GCTGGAGGCC CTGCGGGCCG CCCTCTCCAA GGACCCAGGC ACTGGCTTCG
2041TGTTCAGCTG CCTCAGCGGC CAGGGCCGTA CCACAACTGC GATGGTGGTG GCTGTCCTGG
2101CCTTCTGGCA CATCCAAGGC TTCCCCGAGG TGGGTGAGGA GGAGCTCGTG AGTGTGCCTG
2161ATGCCAAGTT CACTAAGGGT GAATTTCAGG TAGTAATGAA GGTGGTGCAG CTGCTACCCG
2221ATGGGCACCG TGTGAAGAAG GAGGTGGACG CAGCGCTGGA CACTGTCAGC GAGACCATGA
2281CGCCCATGCA CTACCACCTG CGGGAGATCA TCATCTGCAC CTACCGCCAG GCGAAGGCAG
2341CGAAAGAGGC GCAGGAAATG CGGAGGCTGC AGCTGCGGAG CCTGCAGTAC TTGGAGCGCT
2401ATGTCTGCCT GATTCTCTTC AACGCGTACC TCCACCTGGA GAAGGCCGAC TCCTGGCAGA
2461GGCCCTTCAG CACCTGGATG CAGGAGGTGG CATCGAAGGC TGGCATCTAC GAGATCCTTA
2521ACGAGCTGGG CTTCCCCGAG CTGGAGAGCG GGGAGGACCA GCCCTTCTCC AGGCTGCGCT
2581ACCGGTGGCA GGAGCAGAGC TGCAGCCTCG AGCCCTCTGC CCCCGAGGAC TTGCTGTTGC
2641CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg
2701aac

Download FASTA (ORF) (Full)

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