Construct: ORF ccsbBroadEn_08082
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003177.1_s300c1, BRDN0000456344
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BMP10 (27302)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27302 | BMP10 | bone morphogenetic protein 10 | NM_014482.3 | 99.9% | 99.7% | 427G>A |
| 2 | mouse | 12154 | Bmp10 | bone morphogenetic protein 10 | NM_009756.3 | 83.3% | 85.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1341
- ORF length:
- 1272
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGCTCTCTG GTCCTGACAC TGTGCGCTCT TTTCTGCCTG GCAGCTTACT 121 TGGTTTCTGG CAGCCCCATC ATGAACCTAG AGCAGTCTCC TCTGGAAGAA GATATGTCCC 181 TCTTTGGTGA TGTTTTCTCA GAGCAAGACG GTGTCGACTT TAACACACTG CTCCAGAGCA 241 TGAAGGATGA GTTTCTTAAG ACACTAAACC TCTCTGACAT CCCCACGCAG GATTCAGCCA 301 AGGTGGACCC ACCAGAGTAC ATGTTGGAAC TCTACAACAA ATTTGCAACA GATCGGACCT 361 CCATGCCCTC TGCCAACATC ATTAGGAGTT TCAAGAATGA AGATCTGTTT TCCCAGCCGG 421 TCAGTTTTAA TGGGCTCCGA AAATACCCCC TCCTCTTCAA TGTGTCCATT CCTCACCATG 481 AAGAGGTCAT CATGACTGAA CTTAGGCTAT ACACACTGGT GCAAAGGGAT CGTATGATAT 541 ACGATGGAGT AGACCGGAAA ATTACCATTT TTGAAGTGCT GGAGAGCAAA GGGGATAATG 601 AGGGAGAAAG AAACATGCTG GTCTTGGTGT CTGGGGAGAT ATATGGAACC AACAGTGAGT 661 GGGAGACTTT TGATGTCACA GATGCCATCA GACGTTGGCA AAAGTCAGGC TCATCCACCC 721 ACCAGCTGGA GGTCCACATT GAGAGCAAAC ACGATGAAGC TGAGGATGCC AGCAGTGGAC 781 GGCTAGAAAT AGATACCAGT GCCCAGAATA AGCATAACCC TTTGCTCATC GTGTTTTCTG 841 ATGACCAAAG CAGTGACAAG GAGAGGAAGG AGGAACTGAA TGAAATGATT TCCCATGAGC 901 AACTTCCAGA GCTGGACAAC TTGGGCCTGG ATAGCTTTTC CAGTGGACCT GGGGAAGAGG 961 CTTTGTTGCA GATGAGATCA AACATCATCT ATGACTCCAC TGCCCGAATC AGAAGGAACG 1021 CCAAAGGAAA CTACTGTAAG AGGACCCCGC TCTACATCGA CTTCAAGGAG ATTGGGTGGG 1081 ACTCCTGGAT CATCGCTCCG CCTGGATACG AAGCCTATGA ATGCCGTGGT GTTTGTAACT 1141 ACCCCCTGGC AGAGCATCTC ACACCCACAA AGCATGCAAT TATCCAGGCC TTGGTCCACC 1201 TCAAGAATTC CCAGAAAGCT TCCAAAGCCT GCTGTGTGCC CACAAAGCTA GAGCCCATCT 1261 CCATCCTCTA TTTAGACAAA GGCGTCGTCA CCTACAAGTT TAAATACGAA GGCATGGCCG 1321 TCTCCGAATG TGGCTGTAGA TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc 1381 attgcttatc aatttgttgc aacgaac