Construct: ORF ccsbBroadEn_08176
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012953.1_s300c1, BRDN0000390411
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PODXL2 (50512)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 50512 | PODXL2 | podocalyxin like 2 | NM_015720.4 | 99.9% | 100% | 399C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1881
- ORF length:
- 1815
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CCGGCTGCTG CGGGCCGCCC GGCTGCCGCC GCTGCTTTCG CCGCTGCTGC 121 TTCTGCTGGT TGGGGGAGCG TTCCTGGGTG CCTGTGTGGC TGGGTCTGAT GAGCCTGGCC 181 CAGAGGGCCT CACCTCCACC TCCCTGCTAG ACCTCCTGCT GCCCACTGGC TTGGAGCCAC 241 TGGACTCAGA GGAGCCTAGT GAGACCATGG GCCTGGGAGC TGGGCTGGGA GCCCCTGGCT 301 CAGGCTTCCC CAGCGAAGAG AATGAAGAGT CTCGGATTCT GCAGCCACCA CAGTACTTCT 361 GGGAAGAGGA GGAAGAGCTG AATGACTCAA GTCTGGACCT GGGACCCACT GCAGATTATG 421 TTTTTCCTGA CTTAACTGAG AAGGCAGGTT CCATTGAAGA CACTAGCCAG GCTCAAGAGC 481 TGCCAAACCT CCCCTCTCCC TTGCCCAAGA TGAATCTGGT TGAGCCTCCC TGGCATATGC 541 CTCCCAGAGA GGAGGAAGAA GAGGAAGAGG AAGAGGAGGA GAGGGAGAAG GAAGAGGTAG 601 AGAAACAAGA GGAGGAGGAA GAGGAGGAGC TGCTCCCTGT GAATGGATCC CAAGAAGAAG 661 CCAAGCCTCA GGTCCGTGAC TTTTCTCTCA CCAGCAGCAG CCAGACCCCA GGGGCCACCA 721 AAAGCAGGCA TGAAGACTCC GGGGACCAGG CCTCATCAGG TGTGGAGGTG GAGAGCAGCA 781 TGGGGCCCAG CTTGCTGCTG CCTTCAGTCA CCCCAACTAC AGTGACTCCG GGGGACCAGG 841 ACTCCACCAG CCAAGAGGCA GAGGCCACAG TGCTGCCAGC TGCAGGGCTT GGGGTAGAGT 901 TCGAGGCTCC TCAGGAAGCA AGCGAGGAAG CCACTGCAGG AGCAGCTGGT TTGTCTGGCC 961 AGCACGAGGA GGTGCCGGCC TTGCCTTCAT TCCCTCAAAC CACAGCTCCC AGTGGGGCCG 1021 AGCACCCAGA TGAAGATCCC CTTGGCTCTA GAACCTCAGC CTCTTCCCCA CTGGCCCCTG 1081 GAGACATGGA ACTGACACCT TCCTCTGCTA CCTTGGGACA AGAAGATCTC AACCAGCAGC 1141 TCCTAGAAGG GCAGGCAGCT GAAGCTCAAT CCAGGATACC CTGGGATTCT ACGCAGGTGA 1201 TCTGCAAGGA CTGGAGCAAT CTGGCTGGGA AAAACTACAT CATTCTGAAC ATGACAGAGA 1261 ACATAGACTG TGAGGTGTTC CGGCAGCACC GGGGGCCACA GCTCCTGGCC CTGGTGGAAG 1321 AGGTGCTGCC CCGCCATGGC AGTGGCCACC ATGGGGCCTG GCACATCTCT CTGAGCAAGC 1381 CCAGCGAGAA GGAGCAGCAC CTTCTCATGA CACTGGTGGG CGAGCAGGGG GTGGTGCCCA 1441 CTCAAGATGT CCTTTCCATG CTGGGTGACA TCCGCAGGAG CCTGGAGGAG ATTGGCATCC 1501 AGAACTATTC CACAACCAGC AGCTGCCAGG CGCGGGCCAG CCAGGTGCGC AGCGACTACG 1561 GCACGCTCTT CGTGGTGCTG GTGGTCATTG GGGCCATCTG CATCATCATC ATTGCGCTTG 1621 GCCTGCTCTA CAACTGCTGG CAGCGCCGGC TGCCCAAGCT CAAGCACGTG TCGCACGGCG 1681 AGGAGCTGCG CTTCGTGGAG AACGGCTGCC ACGACAACCC CACGCTGGAC GTGGCCAGCG 1741 ACAGCCAGTC GGAGATGCAG GAGAAGCACC CCAGCCTGAA CGGCGGCGGG GCCCTCAACG 1801 GCCCGGGGAG CTGGGGGGCG CTCATGGGGG GCAAGCGGGA CCCCGAGGAC TCGGACGTGT 1861 TCGAGGAGGA CACGCACCTG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1921 attgcttatc aatttgttgc aacgaac