Construct: ORF ccsbBroadEn_08228
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016645.1_s300c1, BRDN0000392283
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PHF11 (51131)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51131 | PHF11 | PHD finger protein 11 | NM_001040444.2 | 99.8% | 100% | 54A>G |
| 2 | human | 51131 | PHF11 | PHD finger protein 11 | NM_001040443.3 | 88.1% | 88.2% | 1_117del;171A>G |
| 3 | human | 51131 | PHF11 | PHD finger protein 11 | NR_135322.2 | 65.1% | (many diffs) | |
| 4 | human | 51131 | PHF11 | PHD finger protein 11 | NR_135323.2 | 53.8% | (many diffs) | |
| 5 | human | 107303344 | SETDB2-PHF11 | SETDB2-PHF11 readthrough | NM_001320727.2 | 35.3% | 35.3% | 1_1599del;1653A>G |
| 6 | human | 107303344 | SETDB2-PHF11 | SETDB2-PHF11 readthrough | NR_135324.2 | 21.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 942
- ORF length:
- 876
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AAAAAGGACA TGTGCACTCT GCCCCAAAGA TGTCGAATAT AATGTCCTGT 121 ACTTTGCACA ATCAGAGAAT ATAGCTGCTC ATGAGAATTG TTTGCTGTAT TCTTCAGGAC 181 TTGTGGAATG TGAGGATCAG GATCCACTTA ATCCTGATAG AAGTTTTGAT GTGGAATCAG 241 TAAAGAAAGA AATCCAGAGA GGAAGGAAGT TGAAATGCAA ATTTTGTCAT AAAAGAGGAG 301 CCACCGTGGG ATGTGATTTA AAAAACTGTA ACAAGAATTA CCACTTTTTC TGTGCCAAGA 361 AGGACGACGC AGTTCCACAG TCTGATGGAG TTCGAGGAAT TTATAAACTG CTTTGCCAGC 421 AACATGCTCA ATTCCCGATC ATCGCTCAAA GTGCTAAATT TTCAGGAGTG AAAAGAAAAA 481 GAGGAAGGAA GAAACCCCTC TCAGGCAATC ATGTACAGCC ACCCGAAACA ATGAAATGTA 541 ATACATTCAT AAGACAAGTG AAAGAAGAGC ATGGCAGACA CACAGATGCA ACTGTGAAAG 601 TTCCTTTTCT TAAGAAATGC AAGGAAGCAG GACTTCTTAA TTACTTACTT GAAGAAATAT 661 TAGACAAAGT TCATTCAATT CCAGAAAAAC TCATGGATGA GACTACTTCA GAATCAGACT 721 ATGAAGAAAT CGGGAGTGCA CTTTTTGACT GTAGATTGTT CGAAGACACA TTTGTAAATT 781 TTCAAGCAGC AATAGAGAAA AAAATTCATG CATCTCAACA AAGGTGGCAG CAGTTGAAGG 841 AAGAGATTGA GCTACTTCAG GACTTAAAAC AAACCTTGTG CTCTTTTCAA GAAAATAGAG 901 ATCTTATGTC AAGTTCTACA TCAATATCAT CCCTGTCTTA TTACCCAACT TTCTTGTACA 961 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac