Construct: ORF ccsbBroadEn_08354
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008981.1_s300c1, BRDN0000389254
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C11orf24 (53838)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53838 | C11orf24 | chromosome 11 open reading ... | NM_022338.4 | 99.9% | 99.7% | 290G>T |
| 2 | human | 53838 | C11orf24 | chromosome 11 open reading ... | XM_005274053.4 | 99.9% | 99.7% | 290G>T |
| 3 | human | 53838 | C11orf24 | chromosome 11 open reading ... | XM_011545103.3 | 92.7% | 92.6% | 0_1ins96;194G>T |
| 4 | human | 53838 | C11orf24 | chromosome 11 open reading ... | NM_001300913.2 | 23.4% | 20% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1413
- ORF length:
- 1347
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG GACAGCTCTT GTGCTCATTT GGATTTTCTC CTTGTCCTTA TCTGAAAGCC 121 ATGCGGCATC CAACGATCCA CGCAACTTTG TCCCTAACAA AATGTGGAAG GGATTAGTCA 181 AGAGGAATGC ATCTGTGGAA ACAGTTGATA ATAAAACGTC TGAGGATGTA ACCATGGCAG 241 CAGCTTCTCC TGTCACATTG ACCAAAGGGA CTTCGGCAGC CCACCTCAAC TCTATGGAAG 301 TCACAACAGA GGACACAAGC AGGACAGATG TGAGTGAACC AGCAACTTCA GGAGTTGCAG 361 CTGATGGTGT GACCTCCATT GCTCCCACGG CTGTGGCCTC CAGTACGACT GCGGCCTCCA 421 TTACGACTGC GGCCTCCAGT ATGACTGTGG CCTCCAGTGC TCCCACGACT GCAGCCTCCA 481 GTACAACTGT GGCCTCCATT GCTCCCACGA CTGCAGCCTC CAGTATGACT GCGGCCTCCA 541 GCACTCCCAT GACACTTGCA CTCCCCGCGC CCACGTCCAC TTCCACAGGG CGGACCCCGT 601 CCACTACCGC CACTGGGCAT CCATCTCTCA GCACAGCCCT CGCACAAGTG CCAAAGAGCA 661 GCGCGTTGCC AAGAACAGCA ACCCTGGCCA CATTGGCCAC ACGTGCTCAG ACTGTAGCGA 721 CCACAGCAAA CACAAGCAGC CCCATGAGCA CTCGTCCAAG TCCTTCCAAG CACATGCCCA 781 GTGACACCGC GGCAAGCCCT GTACCCCCTA TGCGTCCCCA AGCACAAGGT CCCATTAGCC 841 AGGTGTCAGT GGACCAGCCT GTGGTTAACA CAACAAATAA ATCCACACCC ATGCCCTCAA 901 ACACAACCCC AGAGCCCGCC CCCACCCCCA CAGTGGTGAC CACCACCAAG GCACAAGCCA 961 GGGAGCCAAC TGCCAGCCCA GTGCCAGTAC CTCACACCAG CCCAATCCCT GAGATGGAGG 1021 CCATGTCCCC CACGACACAG CCAAGCCCCA TGCCATATAC CCAGAGGGCC GCTGGGCCAG 1081 GCACATCCCA GGCACCGGAG CAGGTAGAGA CTGAAGCCAC ACCAGGTACT GATTCCACTG 1141 GGCCAACACC CAGGAGCTCA GGGGGCACTA AGATGCCAGC CACGGACTCG TGCCAGCCCA 1201 GCACCCAAGG CCAGTACATG GTGGTCACCA CTGAGCCCCT CACCCAGGCC GTGGTAGACA 1261 AAACTCTCCT TCTGGTGGTG CTGTTACTCG GGGTGACCCT TTTCATCACA GTCTTGGTTT 1321 TGTTTGCCCT GCAGGCCTAT GAGAGCTACA AGAAGAAGGA CTACACCCAG GTGGACTACT 1381 TAATCAACGG GATGTATGCG GACTCAGAAA TGTGCCCAAC TTTCTTGTAC AAAGTtggca 1441 ttataagaaa gcattgctta tcaatttgtt gcaacgaac