Construct: ORF ccsbBroadEn_08398

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002843.1_s300c1, BRDN0000391430
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UGT1A4 (54657)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54657 UGT1A4 UDP glucuronosyltransferase... NM_007120.3 99.9% 100% 471T>C
2 human 54579 UGT1A5 UDP glucuronosyltransferase... NM_019078.1 96.3% 93.4% (many diffs)
3 human 54659 UGT1A3 UDP glucuronosyltransferase... NM_019093.2 96.3% 93.2% (many diffs)
4 human 54578 UGT1A6 UDP glucuronosyltransferase... NM_205862.2 48.9% 48.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1671
ORF length:
1602
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCAGAGGA CTCCAGGTTC CCCTGCCGCG GCTGGCCACA GGACTGCTGC
121TCCTCCTCAG TGTCCAGCCC TGGGCTGAGA GTGGAAAGGT GTTGGTGGTG CCCACTGATG
181GCAGCCCCTG GCTCAGCATG CGGGAGGCCT TGCGGGAGCT CCATGCCAGA GGCCACCAGG
241CGGTGGTCCT CACCCCAGAG GTGAATATGC ACATCAAAGA AGAGAAATTT TTCACCCTGA
301CAGCCTATGC TGTTCCATGG ACCCAGAAGG AATTTGATCG CGTTACGCTG GGCTACACTC
361AAGGGTTCTT TGAAACAGAA CATCTTCTGA AGAGATATTC TAGAAGTATG GCAATTATGA
421ACAATGTATC TTTGGCCCTT CATAGGTGTT GTGTGGAGCT ACTGCATAAT GAGGCCCTGA
481TCAGGCACCT GAATGCTACT TCCTTTGATG TGGTTTTAAC AGACCCCGTT AACCTCTGCG
541GGGCGGTGCT GGCTAAGTAC CTGTCGATTC CTGCTGTGTT TTTTTGGAGG TACATTCCAT
601GTGACTTAGA CTTTAAGGGC ACACAGTGTC CAAATCCTTC CTCCTATATT CCTAAGTTAC
661TAACGACCAA TTCAGACCAC ATGACATTCC TGCAAAGGGT CAAGAACATG CTCTACCCTC
721TGGCCCTGTC CTACATTTGC CATACTTTTT CTGCCCCTTA TGCAAGTCTT GCCTCTGAGC
781TTTTTCAGAG AGAGGTGTCA GTGGTGGATC TTGTCAGCTA TGCATCCGTG TGGCTGTTCC
841GAGGGGACTT TGTGATGGAC TACCCCAGGC CGATCATGCC CAACATGGTC TTCATTGGGG
901GCATCAACTG TGCCAACGGG AAGCCACTAT CTCAGGAATT TGAAGCCTAC ATTAATGCTT
961CTGGAGAACA TGGAATTGTG GTTTTCTCTT TGGGATCAAT GGTCTCAGAA ATTCCAGAGA
1021AGAAAGCTAT GGCAATTGCT GATGCTTTGG GCAAAATCCC TCAGACAGTC CTGTGGCGGT
1081ACACTGGAAC CCGACCATCG AATCTTGCGA ACAACACGAT ACTTGTTAAG TGGCTACCCC
1141AAAACGATCT GCTTGGTCAC CCGATGACCC GTGCCTTTAT CACCCATGCT GGTTCCCATG
1201GTGTTTATGA AAGCATATGC AATGGCGTTC CCATGGTGAT GATGCCCTTG TTTGGTGATC
1261AGATGGACAA TGCAAAGCGC ATGGAGACTA AGGGAGCTGG AGTGACCCTG AATGTTCTGG
1321AAATGACTTC TGAAGATTTA GAAAATGCTC TAAAAGCAGT CATCAATGAC AAAAGTTACA
1381AGGAGAACAT CATGCGCCTC TCCAGCCTTC ACAAGGACCG CCCGGTGGAG CCGCTGGACC
1441TGGCCGTGTT CTGGGTGGAG TTTGTGATGA GGCACAAGGG CGCGCCACAC CTGCGCCCCG
1501CAGCCCACGA CCTCACCTGG TACCAGTACC ATTCCTTGGA CGTGATTGGT TTCCTCTTGG
1561CCGTCGTGCT GACAGTGGCC TTCATCACCT TTAAATGTTG TGCTTATGGC TACCGGAAAT
1621GCTTGGGGAA AAAAGGGCGA GTTAAGAAAG CCCACAAATC CAAGACCCAT TTGCCAACTT
1681TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)