Construct: ORF ccsbBroadEn_08414

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015615.1_s300c1, BRDN0000457226
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SWT1 (54823)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54823 SWT1 SWT1 RNA endoribonuclease h... NM_001105518.1 99.7% 99.5% (many diffs)
2 human 54823 SWT1 SWT1 RNA endoribonuclease h... NM_017673.7 99.7% 99.5% (many diffs)
3 human 54823 SWT1 SWT1 RNA endoribonuclease h... XM_017001527.1 99.7% 99.5% (many diffs)
4 human 54823 SWT1 SWT1 RNA endoribonuclease h... XM_024447754.1 99.7% 99.5% (many diffs)
5 human 54823 SWT1 SWT1 RNA endoribonuclease h... XM_005245271.2 98.9% 98.6% (many diffs)
6 human 54823 SWT1 SWT1 RNA endoribonuclease h... XM_005245273.1 98.9% 98.6% (many diffs)
7 human 54823 SWT1 SWT1 RNA endoribonuclease h... XM_011509657.1 98.9% 98.6% (many diffs)
8 human 54823 SWT1 SWT1 RNA endoribonuclease h... XM_024447752.1 98.9% 98.6% (many diffs)
9 human 54823 SWT1 SWT1 RNA endoribonuclease h... XM_024447753.1 98.9% 98.6% (many diffs)
10 human 54823 SWT1 SWT1 RNA endoribonuclease h... XM_017001529.1 91.5% 90.4% (many diffs)
11 human 54823 SWT1 SWT1 RNA endoribonuclease h... XM_017001530.2 90.6% 88.3% (many diffs)
12 human 54823 SWT1 SWT1 RNA endoribonuclease h... XM_017001528.2 87.9% 89.1% (many diffs)
13 human 54823 SWT1 SWT1 RNA endoribonuclease h... XR_001737246.2 68.9% (many diffs)
14 mouse 66875 Swt1 SWT1 RNA endoribonuclease h... XM_011248059.1 49.3% 46% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2766
ORF length:
2700
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CAGCAAAGAA TCCTGTGGGA AAAAAGAGAC ATCTCAGAGG AAAGACACCA
121CCACCTCATC ACCCAATTTT GGTGAAAAAG ACAAGAAAGA GAGAAAAACC CCAGCAAGTT
181CTACTAGTTC GTCTTCTATA AGATCAGTTT CATCAGAAAA GAGAAAACTG AAATCAGATC
241ATACAGATGT TCTGTACTAT AATATAAAAA GAAGACAAGG ACTGAAAAGA TTGAGTGTAG
301AAATTGACAC TCTCAGAAGG AGACCAAAAA TCGGTTCTTC ATCCCAAAGA CCTATTAAAC
361TCAAAGAAGC ATCATATTCA AATGATAATC AAATTATTTT GCAGAGTCCT TCTTCAAATG
421GAACTAAAAA AGACATACAT AAATGTGTAG ACTTTAAACC TAAAGATATC AAATTGACAA
481ATGCTGGGAG CAAGCTTGAC CATGGAGTTA AAAGCCTTAG TAGTCCTAAG ATTGCCAGTG
541ATGTGAAACC TAAAGCCGAA GGCCAGGCAA GTGAAAATAA ATGGTCTCAT TTACTTGTTC
601AGAGAGAGAA GATGAAAGAA CTCAAGAAAG GAAGAAACAG TAAATTTAGA GACAATTCTG
661AAAAATGTGT CTTAGAGAAA TGGAAGAGAA ATCAATTTTC TCAGGATTAT AACTCCAACA
721AGATAATTAA GGAACCCTTG GGATCTAGGA GACAGAAGAT CAGTTTCAAA ATCCCTATAA
781AATCCCGTGA CACCCTCCAG AAACTTGTAG AAGAAAATGT CTTCAACATA GATTCTAATA
841ATTCGAAGAC TAAGCAGGAA GAAAGAGAAT ACCTGGAAAG CTCCCAGGTT TCATTAAATG
901TGACTAGGCA GAAAACTGAA CATTTACTTT CAGATTTTAC ATATAAGCGG ACTGTTCATG
961AGTGGAAACG AAAACATCAT TATGACCATC AAGAAAGTAA TGATTCACAT TCTAGGGAAA
1021ACCTAACCCA GAGTTTTGAA GCACCATGTT GTTCCGTGTC ATCTGAAAGT ATCCAGGATG
1081CAGATCAAGA GATGCAGATA GTAGAAGAGC TTCATGCTGC ACGTGTGGGA AAAAGTGTGG
1141ATTTACCTGG AGAGTTAATG AGTATGGAAA TTGACTTAGA AGATGATGTA CATTCCTCCT
1201CTGCAAATAA TACTTCAGAC AGAAAGCTTC TAATTGTTAT TGACACAAAT ATTCTGATGA
1261ATCATCTCAA ATTTGTTAGA ATTTTGAAGA CAACAGAAGT ACCAGGTTTT GACAAACTTG
1321TGTTAATAAT TCCCTGGGTC GTTATGCAAG AGCTAGATCG TATGAAGGAA GGAAAACTAC
1381TAAAACGTGC CCAGCACAAA GCTATACCTG CAGTTCATTT CATCAACGAC AGTCTCAAAA
1441ATCAAGATAG AAAGCTATGG GGTCAGTCAA TACAACTTGC ATCCCAAAAA CATTATGGAT
1501TGAGTGATGA GAACAATGAT GATCGAGTAC TAAAATGCTG TCTCCAGCAC CAGGAATTAT
1561TCCCTTGTTC TTTTGTTATT CTGTGCACGG ATGATAGAAA CTTAAGAAAC AAAGGCCTGA
1621TAAGTGGTGT GAAGTCACTC AGTAAAGAAG AATTGAGTGC AGAGTTATTA CGCTTATCTC
1681TGAACACAGA TGTGTGTCAT CAGCCTTGTA TTCCTAAGCA ACAGTTGAAA GCAGAAACAA
1741CACCCTTGAA AGAGAGCTAT AAGGAGGAAT CTACAAGTTC TGGACTGTCC ATTCTGCTTG
1801AGAGCATTGT ATCTGATCTT GAAAAATCTC TTGGAACAGG TTTATCTTCA ATATTAGAAA
1861CAGAAATGAA AATTGCTTTT GGAAACCTTT GGATGGAGAT CCTGTACCTG AAACCACCAT
1921GGACTCTACT ACATTTACTA CAGTGCTTTA AAAAACATTG GTTGGCTGTA TTTGGATTAG
1981TTATGGAAAA GAACTTGCTT TTAACTATTG AGAGCCTATA CAAAAATCTC CGTAAAGCTA
2041ATAAGGCAGT GGATTTTACA ACAGTCAAAT TCTTGCTTCA GGATTCTAGA AGTTTGTTAC
2101ATGCTTTCAG TACAAGGTCA AATTATGATG GTATTCTTCC ACAGACCTTT GCTCAAGTAA
2161ACAACCTCCT TCAGACATTT GCAGAGGTCA AGACAAAACT TAAGCCAAAT TCTTCAGAAA
2221ACACAGTGAC TAAAAAGCAG GAAGGTACTT CATTGAAGAA TTCTCATAAT CAAGAAATCA
2281CTGTTTTCTC GAGTTCTCAT CTTCCCCAAC CCAGCAGGCA TCAAGAAATC TGGTCTATCC
2341TAGAGAGTGT TTGGATTACA ATATATCAGA ACAGCACGGA TGTATTTCAA AGATTGGGCT
2401CAAATTCAGC TCTGACTACT TCAAATATAG CATCATTTGA AGAAGCATTT ATATGTCTTC
2461AAAAGTTAAT GGCAGCTGTG AGGGATATTC TTGAAGGAAT TCAAAGGATT TTGGCCCCAA
2521ACAGTGATTA TCAAGATGTT GAGACCCTCT ATAACTTCCT AATCAAGTAT GAGGTAAATA
2581AAAATGTCAA ATTTACTGCC CAGGAAATTT ATGATTGTGT TTCTCAGACT GAGTATAGGG
2641AAAAGTTAAC CATTGGATGC CGCCAGCTGG TTGAGATGGA ATATACCATG CAGCAGTGCA
2701ATGCATCTGT TTATATGGAG GCCAAAAACA GGGGATGGTG TGAAGACATG CTCAACTATA
2761GGATATACCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt
2821gttgcaacga ac

Download FASTA (ORF) (Full)