Construct: ORF ccsbBroadEn_08433
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004358.1_s300c1, BRDN0000388437
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC41A3 (54946)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54946 | SLC41A3 | solute carrier family 41 me... | NM_001008485.1 | 99.9% | 100% | 1275C>G |
| 2 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_005247562.1 | 99.8% | 99.8% | 184A>G;1275C>G |
| 3 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_005247563.2 | 99.8% | 99.8% | 184A>G;1275C>G |
| 4 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_006713681.3 | 99.8% | 99.8% | 184A>G;1275C>G |
| 5 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_005247559.1 | 96.9% | 96.9% | 184A>G;382_426del;1320C>G |
| 6 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_017006705.1 | 96.9% | 96.9% | 184A>G;382_426del;1320C>G |
| 7 | human | 54946 | SLC41A3 | solute carrier family 41 me... | NM_001008486.1 | 92.8% | 92.8% | 273_274ins108;1167C>G |
| 8 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_024453610.1 | 92.7% | 92.7% | 184A>G;273_274ins108;1167C>G |
| 9 | human | 54946 | SLC41A3 | solute carrier family 41 me... | NM_017836.3 | 92.4% | 89.1% | (many diffs) |
| 10 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_017006706.1 | 92.3% | 88.9% | (many diffs) |
| 11 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_017006707.1 | 92.3% | 88.9% | (many diffs) |
| 12 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_024453609.1 | 92.3% | 88.9% | (many diffs) |
| 13 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_005247564.1 | 89.7% | 86.4% | (many diffs) |
| 14 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_005247565.2 | 88.9% | 82.3% | (many diffs) |
| 15 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_011512945.1 | 86.4% | 80% | (many diffs) |
| 16 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_017006708.1 | 85.3% | 82% | (many diffs) |
| 17 | human | 54946 | SLC41A3 | solute carrier family 41 me... | XM_017006709.1 | 85.3% | 82% | (many diffs) |
| 18 | human | 54946 | SLC41A3 | solute carrier family 41 me... | NM_001008487.1 | 81.8% | 72.2% | (many diffs) |
| 19 | human | 54946 | SLC41A3 | solute carrier family 41 me... | NM_001164475.1 | 69.6% | 66.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1587
- ORF length:
- 1521
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TGGGACAGAG ACCCGGCAGC GGAGGCTGGA CAGCTGTGGC AAGCCAGGGG 121 AGCTGGGGCT TCCTCACCCC CTCAGCACAG GAGGACTCCC TGTAGCCTCA GAAGATGGAG 181 CTCTCAGGGC CCCTGAGAGC CAAAGCGTGA CCCCCAAGCC ACTGGAGACT GAGCCTAGCA 241 GGGAGACCGC CTGGTCCATA GGCCTTCAGG TGACCGTGCC CTTCATGTTT GCAGGCCTGG 301 GACTGTCCTG GGCCGGCATG CTTCTGGACT ATTTCCAGCA CTGGCCTGTG TTTGTGGAGG 361 TGAAAGACCT TTTGACATTG GTGCCGCCCC TGGTGGGCCT GAAGGGGAAC CTGGAGATGA 421 CACTGGCATC CAGACTCTCC ACAGCTGCCA ACACTGGACA AATTGATGAC CCCCAGGAGC 481 AGCACAGAGT CATCAGCAGC AACCTGGCCC TCATCCAGGT GCAGGCCACT GTCGTGGGGC 541 TCTTGGCTGC TGTGGCTGCG CTGCTGTTGG GCGTGGTGTC TCGAGAGGAA GTGGATGTCG 601 CCAAGGTGGA GTTGCTGTGT GCCAGCAGTG TCCTCACTGC CTTCCTTGCA GCCTTTGCCC 661 TGGGGGTGCT GATGGTCTGT ATAGTGATTG GTGCTCGAAA GCTCGGGGTC AACCCAGACA 721 ACATTGCCAC GCCCATTGCA GCCAGCCTGG GAGACCTCAT CACACTGTCC ATTCTGGCTT 781 TGGTTAGCAG CTTCTTCTAC AGACACAAAG ATAGTCGGTA TCTGACGCCG CTGGTCTGCC 841 TCAGCTTTGC GGCTCTGACC CCAGTGTGGG TCCTCATTGC CAAGCAGAGC CCACCCATCG 901 TGAAGATCCT GAAGTTTGGC TGGTTCCCAA TCATCCTGGC CATGGTCATC AGCAGTTTCG 961 GAGGACTCAT CTTGAGCAAA ACCGTTTCTA AACAGCAGTA CAAAGGCATG GCGATATTTA 1021 CCCCCGTCAT ATGTGGTGTT GGTGGCAATC TGGTGGCCAT TCAGACCAGC CGAATCTCAA 1081 CCTACCTGCA CATGTGGAGT GCACCTGGCG TCCTGCCCCT CCAGATGAAG AAATTCTGGC 1141 CCAACCCGTG TTCTACTTTC TGCACGTCAG AAATCAATTC CATGTCAGCT CGAGTCCTGC 1201 TCTTGCTGGT GGTCCCAGGC CATCTGATTT TCTTCTACAT CATCTACCTG GTGGAGGGTC 1261 AGTCAGTCAT AAACAGCCAG ACCTTTGTGG TGCTCTACCT GCTGGCAGGC CTGATCCAGG 1321 TGACAATCCT GCTGTACCTG GCAGAAGTGA TGGTTCGGCT GACTTGGCAC CAGGCCCTGG 1381 ATCCTGACAA CCACTGCATC CCCTACCTTA CAGGGCTGGG GGACCTGCTC GGTTCAAGCT 1441 CCGTGGGCCA CACTGCTGCT GTGCCAAGAA GGTGTACAGC CTCCCCAGGA TGGGGCCTCA 1501 TACAACCCTT CATCTGCACT CAACATTTAA TCGTGTCCTT GCTGTCTTTT TATTTTCCTT 1561 TTTGTTTGTT AGCAAAAACC TCTATTTACC CAACTTTCTT GTACAAAGTt ggcattataa 1621 gaaagcattg cttatcaatt tgttgcaacg aac