Construct: ORF ccsbBroadEn_08473

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015823.1_s300c1, BRDN0000457436
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARMC4 (55130)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55130 ARMC4 armadillo repeat containing 4 NM_001290020.2 99.9% 100% 2058T>C
2 human 55130 ARMC4 armadillo repeat containing 4 NM_018076.5 99.9% 100% 2058T>C
3 human 55130 ARMC4 armadillo repeat containing 4 XM_011519527.1 98% 98.1% 2058T>C;3022_3081del
4 human 55130 ARMC4 armadillo repeat containing 4 XM_024448053.1 96% 96% 2058T>C;2496_2624del
5 human 55130 ARMC4 armadillo repeat containing 4 XM_024448049.1 94.2% 94.3% 2058T>C;2496_2624del;3151_3210del
6 human 55130 ARMC4 armadillo repeat containing 4 XM_024448050.1 94.2% 94.3% 2058T>C;2496_2624del;3151_3210del
7 human 55130 ARMC4 armadillo repeat containing 4 XM_024448051.1 94.2% 94.3% 2058T>C;2496_2624del;3151_3210del
8 human 55130 ARMC4 armadillo repeat containing 4 XM_024448052.1 94.2% 94.3% 2058T>C;2496_2624del;3151_3210del
9 human 55130 ARMC4 armadillo repeat containing 4 XM_024448054.1 87.9% 87.9% (many diffs)
10 human 55130 ARMC4 armadillo repeat containing 4 NM_001312689.2 70.4% 70.4% 0_1ins924;1134T>C
11 human 55130 ARMC4 armadillo repeat containing 4 XM_017016371.1 67% 66.9% (many diffs)
12 human 55130 ARMC4 armadillo repeat containing 4 XM_024448055.1 66.4% 66.4% (many diffs)
13 human 55130 ARMC4 armadillo repeat containing 4 XM_024448056.1 66.4% 66.4% (many diffs)
14 human 55130 ARMC4 armadillo repeat containing 4 XM_024448057.1 61.5% 61.6% (many diffs)
15 human 55130 ARMC4 armadillo repeat containing 4 NM_001290021.2 52.3% 49.6% (many diffs)
16 human 55130 ARMC4 armadillo repeat containing 4 XM_024448058.1 51.3% 51.4% (many diffs)
17 mouse 74934 Armc4 armadillo repeat containing 4 NM_001081393.1 81.7% 84.9% (many diffs)
18 mouse 74934 Armc4 armadillo repeat containing 4 XM_006526311.3 81.7% 84.9% (many diffs)
19 mouse 74934 Armc4 armadillo repeat containing 4 XM_006526312.3 72.1% 75.8% (many diffs)
20 mouse 74934 Armc4 armadillo repeat containing 4 XM_006526313.3 72% 76.3% (many diffs)
21 mouse 74934 Armc4 armadillo repeat containing 4 XM_011247016.1 58.9% 62.5% (many diffs)
22 mouse 74934 Armc4 armadillo repeat containing 4 XM_011247017.1 48.8% 53.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3201
ORF length:
3132
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGTGTGGCT CTGAGGAAAT TGACGCAGTG GACTGCTGCC GGACATGGAA
121CTGGAATCCT CGAAATCACC CCTCTAAATG AAGCGATATT GAAAGAAATT ATTGTGTTTG
181TGGAGAGTTT TATCTATAAA CATCCTCAAG AGGCAAAATT TGTTTTTGTG GAACCACTTG
241AATGGAACAC AAGTTTGGCG CCCTCAGCAT TTGAATCAGG TTATGTTGTC AGTGAAACAA
301CAGTCAAATC AGAAGAAGTT GATAAAAATG GACAGCCTTT GCTATTTCTC TCTGTACCAC
361AAATTAAAAT TAGGAGCTTT GGGCAGCTGT CACGCTTGTT ACTTATTGCC AAAACTGGGA
421AGTTGAAGGA AGCCCAAGCA TGTGTTGAAG CTAACAGAGA CCCCATAGTA AAAATCCTGG
481GCTCTGATTA TAATACAATG AAAGAAAACT CAATTGCATT AAATATTCTT GGCAAAATTA
541CCAGAGATGA TGATCCTGAA AGTGAAATTA AGATGAAGAT TGCTATGCTG CTTAAGCAAT
601TGGATCTGCA CCTCCTCAAT CATTCTCTAA AACATATTTC ATTAGAAATA AGTTTAAGTC
661CCATGACGGT GAAGAAGGAT ATAGAACTGC TCAAACGTTT CTCAGGAAAA GGAAACCAAA
721CAGTCTTGGA ATCTATTGAA TATACCTCAG ATTATGAATT TTCAAATGGA TGTCGAGCCC
781CACCGTGGAG ACAAATTCGT GGGGAAATTT GTTATGTGCT GGTGAAACCT CACGATGGTG
841AGACTCTGTG CATTACTTGC AGTGCAGGAG GAGTATTTTT AAATGGTGGC AAAACAGATG
901ATGAAGGGGA CGTTAATTAT GAGAGAAAAG GTTCAATTTA TAAAAACCTT GTCACATTTT
961TAAGAGAAAA ATCACCAAAA TTTTCAGAAA ATATGTCTAA ATTGGGAATT AGCTTCAGTG
1021AAGACCAGCA AAAGGAAAAG GATCAGCTTG GCAAAGCCCC CAAGAAGGAA GAAGCAGCTG
1081CCCTCCGCAA AGACATTTCT GGTTCAGACA AAAGGTCACT GGAGAAGAAC CAAATTAATT
1141TTTGGAGGAA TCAAATGACC AAGAGATGGG AACCAAGCTT AAACTGGAAG ACCACTGTTA
1201ATTACAAAGG CAAAGGCTCA GCAAAAGAAA TCCAAGAGGA CAAACACACA GGAAAACTTG
1261AAAAACCAAG ACCATCTGTT TCACACGGAA GAGCACAATT ACTTCGGAAG AGTGCTGAAA
1321AGATTGAGGA AACTGTTAGC GATAGCTCCT CAGAAAGTGA GGAAGATGAA GAACCACCTG
1381ACCATCGTCA GGAAGCAAGT GCAGATTTGC CATCAGAATA TTGGCAAATT CAGAAGCTGG
1441TGAAATATTT AAAGGGAGGA AATCAAACAG CTACAGTGAT TGCGTTGTGT TCAATGAGGG
1501ATTTCAGCTT AGCTCAAGAA ACCTGCCAGT TGGCCATCAG AGATGTTGGA GGCCTGGAAG
1561TGCTGATAAA TTTGCTTGAA ACCGATGAAG TCAAATGTAA GATTGGTTCA TTAAAAATAC
1621TGAAGGAAAT CAGTCATAAT CCTCAAATCA GACAGAATAT TGTTGACCTT GGGGGCTTAC
1681CAATTATGGT GAATATACTT GATTCTCCAC ACAAGAGTCT AAAATGTTTG GCAGCCGAGA
1741CTATCGCGAA TGTTGCCAAG TTTAAAAGAG CACGGCGGGT GGTGAGGCAG CACGGGGGTA
1801TCACCAAACT GGTTGCTCTA CTAGACTGTG CACATGATTC CACAAAACCT GCCCAATCGA
1861GTCTGTATGA GGCCAGAGAC GTGGAAGTGG CTCGCTGTGG GGCACTGGCC CTGTGGAGCT
1921GCAGTAAGAG TCATACGAAT AAAGAAGCCA TCCGCAAAGC TGGGGGCATT CCTCTGTTGG
1981CTCGGCTGCT GAAGACTTCT CATGAAAACA TGCTAATTCC AGTGGTGGGG ACATTGCAAG
2041AGTGTGCATC AGAGGAAAAC TACCGGGCTG CAATCAAAGC AGAAAGGATC ATTGAAAACC
2101TTGTCAAGAA CCTAAATAGT GAGAACGAGC AGCTGCAGGA GCACTGCGCC ATGGCCATTT
2161ACCAGTGTGC TGAAGATAAG GAAACCCGGG ACCTCGTTAG GCTGCACGGA GGACTTAAGC
2221CCTTGGCCAG TCTACTCAAT AACACTGACA ATAAAGAGCG GTTAGCTGCT GTCACAGGGG
2281CTATATGGAA ATGTTCCATC AGCAAAGAGA ATGTTACCAA GTTTCGGGAA TACAAAGCCA
2341TTGAAACCTT GGTGGGACTT CTAACAGATC AGCCTGAAGA AGTACTTGTG AATGTGGTTG
2401GGGCCTTGGG AGAATGCTGC CAAGAACGTG AAAACCGAGT CATTGTCCGG AAATGTGGTG
2461GCATTCAACC ACTTGTGAAC CTCCTTGTTG GAATAAACCA AGCTCTTCTT GTGAATGTTA
2521CAAAAGCAGT TGGTGCTTGT GCAGTAGAAC CTGAAAGTAT GATGATAATT GATCGCTTAG
2581ATGGAGTTCG TTTGTTGTGG TCCCTGCTGA AAAATCCTCA CCCAGACGTG AAGGCCAGCG
2641CAGCATGGGC ACTCTGTCCA TGCATCAAAA ATGCAAAGGA TGCTGGGGAA ATGGTTCGTT
2701CCTTTGTTGG TGGTTTGGAA CTTATTGTCA ATTTACTGAA ATCAGATAAC AAAGAAGTTC
2761TGGCAAGTGT ATGTGCTGCC ATTACCAACA TAGCAAAAGA TCAAGAAAAT TTAGCTGTTA
2821TCACAGATCA TGGAGTTGTT CCTTTATTGT CCAAACTGGC AAATACAAAT AACAATAAAT
2881TGAGACATCA TCTAGCAGAA GCTATTTCAC GTTGCTGTAT GTGGGGCAGG AATAGAGTGG
2941CCTTCGGTGA GCACAAAGCA GTGGCTCCAC TAGTGCGTTA TCTGAAATCA AATGACACCA
3001ACGTGCATCG GGCGACAGCT CAGGCCTTGT ACCAACTCTC AGAAGACGCC GATAACTGCA
3061TCACCATGCA TGAGAATGGT GCAGTAAAGC TTCTACTGGA TATGGTTGGG TCCCCTGACC
3121AGGATCTCCA GGAAGCTGCA GCTGGTTGTA TATCCAATAT CCGCAGGCTG GCTCTTGCTA
3181CAGAGAAGGC AAGATACACT TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc
3241attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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