Construct: ORF ccsbBroadEn_08473
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015823.1_s300c1, BRDN0000457436
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARMC4 (55130)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55130 | ARMC4 | armadillo repeat containing 4 | NM_001290020.2 | 99.9% | 100% | 2058T>C |
| 2 | human | 55130 | ARMC4 | armadillo repeat containing 4 | NM_018076.5 | 99.9% | 100% | 2058T>C |
| 3 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_011519527.1 | 98% | 98.1% | 2058T>C;3022_3081del |
| 4 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_024448053.1 | 96% | 96% | 2058T>C;2496_2624del |
| 5 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_024448049.1 | 94.2% | 94.3% | 2058T>C;2496_2624del;3151_3210del |
| 6 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_024448050.1 | 94.2% | 94.3% | 2058T>C;2496_2624del;3151_3210del |
| 7 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_024448051.1 | 94.2% | 94.3% | 2058T>C;2496_2624del;3151_3210del |
| 8 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_024448052.1 | 94.2% | 94.3% | 2058T>C;2496_2624del;3151_3210del |
| 9 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_024448054.1 | 87.9% | 87.9% | (many diffs) |
| 10 | human | 55130 | ARMC4 | armadillo repeat containing 4 | NM_001312689.2 | 70.4% | 70.4% | 0_1ins924;1134T>C |
| 11 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_017016371.1 | 67% | 66.9% | (many diffs) |
| 12 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_024448055.1 | 66.4% | 66.4% | (many diffs) |
| 13 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_024448056.1 | 66.4% | 66.4% | (many diffs) |
| 14 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_024448057.1 | 61.5% | 61.6% | (many diffs) |
| 15 | human | 55130 | ARMC4 | armadillo repeat containing 4 | NM_001290021.2 | 52.3% | 49.6% | (many diffs) |
| 16 | human | 55130 | ARMC4 | armadillo repeat containing 4 | XM_024448058.1 | 51.3% | 51.4% | (many diffs) |
| 17 | mouse | 74934 | Armc4 | armadillo repeat containing 4 | NM_001081393.1 | 81.7% | 84.9% | (many diffs) |
| 18 | mouse | 74934 | Armc4 | armadillo repeat containing 4 | XM_006526311.3 | 81.7% | 84.9% | (many diffs) |
| 19 | mouse | 74934 | Armc4 | armadillo repeat containing 4 | XM_006526312.3 | 72.1% | 75.8% | (many diffs) |
| 20 | mouse | 74934 | Armc4 | armadillo repeat containing 4 | XM_006526313.3 | 72% | 76.3% | (many diffs) |
| 21 | mouse | 74934 | Armc4 | armadillo repeat containing 4 | XM_011247016.1 | 58.9% | 62.5% | (many diffs) |
| 22 | mouse | 74934 | Armc4 | armadillo repeat containing 4 | XM_011247017.1 | 48.8% | 53.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3201
- ORF length:
- 3132
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGTGTGGCT CTGAGGAAAT TGACGCAGTG GACTGCTGCC GGACATGGAA 121 CTGGAATCCT CGAAATCACC CCTCTAAATG AAGCGATATT GAAAGAAATT ATTGTGTTTG 181 TGGAGAGTTT TATCTATAAA CATCCTCAAG AGGCAAAATT TGTTTTTGTG GAACCACTTG 241 AATGGAACAC AAGTTTGGCG CCCTCAGCAT TTGAATCAGG TTATGTTGTC AGTGAAACAA 301 CAGTCAAATC AGAAGAAGTT GATAAAAATG GACAGCCTTT GCTATTTCTC TCTGTACCAC 361 AAATTAAAAT TAGGAGCTTT GGGCAGCTGT CACGCTTGTT ACTTATTGCC AAAACTGGGA 421 AGTTGAAGGA AGCCCAAGCA TGTGTTGAAG CTAACAGAGA CCCCATAGTA AAAATCCTGG 481 GCTCTGATTA TAATACAATG AAAGAAAACT CAATTGCATT AAATATTCTT GGCAAAATTA 541 CCAGAGATGA TGATCCTGAA AGTGAAATTA AGATGAAGAT TGCTATGCTG CTTAAGCAAT 601 TGGATCTGCA CCTCCTCAAT CATTCTCTAA AACATATTTC ATTAGAAATA AGTTTAAGTC 661 CCATGACGGT GAAGAAGGAT ATAGAACTGC TCAAACGTTT CTCAGGAAAA GGAAACCAAA 721 CAGTCTTGGA ATCTATTGAA TATACCTCAG ATTATGAATT TTCAAATGGA TGTCGAGCCC 781 CACCGTGGAG ACAAATTCGT GGGGAAATTT GTTATGTGCT GGTGAAACCT CACGATGGTG 841 AGACTCTGTG CATTACTTGC AGTGCAGGAG GAGTATTTTT AAATGGTGGC AAAACAGATG 901 ATGAAGGGGA CGTTAATTAT GAGAGAAAAG GTTCAATTTA TAAAAACCTT GTCACATTTT 961 TAAGAGAAAA ATCACCAAAA TTTTCAGAAA ATATGTCTAA ATTGGGAATT AGCTTCAGTG 1021 AAGACCAGCA AAAGGAAAAG GATCAGCTTG GCAAAGCCCC CAAGAAGGAA GAAGCAGCTG 1081 CCCTCCGCAA AGACATTTCT GGTTCAGACA AAAGGTCACT GGAGAAGAAC CAAATTAATT 1141 TTTGGAGGAA TCAAATGACC AAGAGATGGG AACCAAGCTT AAACTGGAAG ACCACTGTTA 1201 ATTACAAAGG CAAAGGCTCA GCAAAAGAAA TCCAAGAGGA CAAACACACA GGAAAACTTG 1261 AAAAACCAAG ACCATCTGTT TCACACGGAA GAGCACAATT ACTTCGGAAG AGTGCTGAAA 1321 AGATTGAGGA AACTGTTAGC GATAGCTCCT CAGAAAGTGA GGAAGATGAA GAACCACCTG 1381 ACCATCGTCA GGAAGCAAGT GCAGATTTGC CATCAGAATA TTGGCAAATT CAGAAGCTGG 1441 TGAAATATTT AAAGGGAGGA AATCAAACAG CTACAGTGAT TGCGTTGTGT TCAATGAGGG 1501 ATTTCAGCTT AGCTCAAGAA ACCTGCCAGT TGGCCATCAG AGATGTTGGA GGCCTGGAAG 1561 TGCTGATAAA TTTGCTTGAA ACCGATGAAG TCAAATGTAA GATTGGTTCA TTAAAAATAC 1621 TGAAGGAAAT CAGTCATAAT CCTCAAATCA GACAGAATAT TGTTGACCTT GGGGGCTTAC 1681 CAATTATGGT GAATATACTT GATTCTCCAC ACAAGAGTCT AAAATGTTTG GCAGCCGAGA 1741 CTATCGCGAA TGTTGCCAAG TTTAAAAGAG CACGGCGGGT GGTGAGGCAG CACGGGGGTA 1801 TCACCAAACT GGTTGCTCTA CTAGACTGTG CACATGATTC CACAAAACCT GCCCAATCGA 1861 GTCTGTATGA GGCCAGAGAC GTGGAAGTGG CTCGCTGTGG GGCACTGGCC CTGTGGAGCT 1921 GCAGTAAGAG TCATACGAAT AAAGAAGCCA TCCGCAAAGC TGGGGGCATT CCTCTGTTGG 1981 CTCGGCTGCT GAAGACTTCT CATGAAAACA TGCTAATTCC AGTGGTGGGG ACATTGCAAG 2041 AGTGTGCATC AGAGGAAAAC TACCGGGCTG CAATCAAAGC AGAAAGGATC ATTGAAAACC 2101 TTGTCAAGAA CCTAAATAGT GAGAACGAGC AGCTGCAGGA GCACTGCGCC ATGGCCATTT 2161 ACCAGTGTGC TGAAGATAAG GAAACCCGGG ACCTCGTTAG GCTGCACGGA GGACTTAAGC 2221 CCTTGGCCAG TCTACTCAAT AACACTGACA ATAAAGAGCG GTTAGCTGCT GTCACAGGGG 2281 CTATATGGAA ATGTTCCATC AGCAAAGAGA ATGTTACCAA GTTTCGGGAA TACAAAGCCA 2341 TTGAAACCTT GGTGGGACTT CTAACAGATC AGCCTGAAGA AGTACTTGTG AATGTGGTTG 2401 GGGCCTTGGG AGAATGCTGC CAAGAACGTG AAAACCGAGT CATTGTCCGG AAATGTGGTG 2461 GCATTCAACC ACTTGTGAAC CTCCTTGTTG GAATAAACCA AGCTCTTCTT GTGAATGTTA 2521 CAAAAGCAGT TGGTGCTTGT GCAGTAGAAC CTGAAAGTAT GATGATAATT GATCGCTTAG 2581 ATGGAGTTCG TTTGTTGTGG TCCCTGCTGA AAAATCCTCA CCCAGACGTG AAGGCCAGCG 2641 CAGCATGGGC ACTCTGTCCA TGCATCAAAA ATGCAAAGGA TGCTGGGGAA ATGGTTCGTT 2701 CCTTTGTTGG TGGTTTGGAA CTTATTGTCA ATTTACTGAA ATCAGATAAC AAAGAAGTTC 2761 TGGCAAGTGT ATGTGCTGCC ATTACCAACA TAGCAAAAGA TCAAGAAAAT TTAGCTGTTA 2821 TCACAGATCA TGGAGTTGTT CCTTTATTGT CCAAACTGGC AAATACAAAT AACAATAAAT 2881 TGAGACATCA TCTAGCAGAA GCTATTTCAC GTTGCTGTAT GTGGGGCAGG AATAGAGTGG 2941 CCTTCGGTGA GCACAAAGCA GTGGCTCCAC TAGTGCGTTA TCTGAAATCA AATGACACCA 3001 ACGTGCATCG GGCGACAGCT CAGGCCTTGT ACCAACTCTC AGAAGACGCC GATAACTGCA 3061 TCACCATGCA TGAGAATGGT GCAGTAAAGC TTCTACTGGA TATGGTTGGG TCCCCTGACC 3121 AGGATCTCCA GGAAGCTGCA GCTGGTTGTA TATCCAATAT CCGCAGGCTG GCTCTTGCTA 3181 CAGAGAAGGC AAGATACACT TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc 3241 attgcttatc aatttgttgc aacgaac