Construct: ORF ccsbBroadEn_08543
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004674.1_s300c1, BRDN0000391625
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KLK15 (55554)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55554 | KLK15 | kallikrein related peptidas... | NM_017509.3 | 99.8% | 100% | 183C>A |
| 2 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_006723265.3 | 99.8% | 100% | 183C>A |
| 3 | human | 55554 | KLK15 | kallikrein related peptidas... | NM_001277081.1 | 99.4% | 99.6% | 40_41insCAG;180C>A |
| 4 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_011527085.2 | 99.4% | 99.6% | 40_41insCAG;180C>A |
| 5 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_011527087.2 | 66.6% | 66.7% | 183C>A;361_362ins255 |
| 6 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_011527088.2 | 62.6% | 62.5% | 183C>A;482G>T;483_484ins285 |
| 7 | human | 55554 | KLK15 | kallikrein related peptidas... | NM_001277082.1 | 62.2% | 62.1% | (many diffs) |
| 8 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_011527089.2 | 62.2% | 62.1% | (many diffs) |
| 9 | human | 55554 | KLK15 | kallikrein related peptidas... | NR_102274.1 | 48.7% | (many diffs) | |
| 10 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_017026943.1 | 47.1% | 47.2% | 183C>A;363_364ins405 |
| 11 | human | 55554 | KLK15 | kallikrein related peptidas... | XR_001753713.1 | 30.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 837
- ORF length:
- 768
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTGGCTTCTC CTCACTCTCT CCTTCCTGCT GGCATCCACA GCAGCCCAGG 121 ATGGTGACAA GTTGCTGGAA GGTGACGAGT GTGCACCCCA CTCCCAGCCA TGGCAAGTGG 181 CTCTCTACGA GCGTGGACGC TTTAACTGTG GCGCTTCCCT CATCTCCCCA CACTGGGTGC 241 TGTCTGCGGC ACACTGCCAA AGCCGCTTCA TGAGAGTGCG CCTGGGAGAG CACAACCTGC 301 GCAAGCGCGA TGGCCCAGAG CAACTACGGA CCACGTCTCG GGTCATTCCA CACCCGCGCT 361 ACGAAGCGCG CAGCCACCGC AACGACATCA TGTTGCTGCG CCTAGTCCAG CCCGCACGCC 421 TGAACCCCCA GGTGCGCCCC GCGGTGCTAC CCACGCGTTG CCCCCACCCG GGGGAGGCCT 481 GTGTGGTGTC TGGCTGGGGC CTGGTGTCCC ACAACGAGCC TGGGACCGCT GGGAGCCCCC 541 GGTCACAAGT GAGTCTCCCA GATACGTTGC ATTGTGCCAA CATCAGCATT ATCTCGGACA 601 CATCTTGTGA CAAGAGCTAC CCAGGGCGCC TGACAAACAC CATGGTGTGT GCAGGCGCGG 661 AGGGCAGAGG CGCAGAATCC TGTGAGGGTG ACTCTGGGGG ACCCCTGGTC TGTGGGGGCA 721 TCCTGCAGGG CATTGTGTCC TGGGGTGACG TCCCTTGTGA CAACACCACC AAGCCTGGTG 781 TCTATACCAA AGTCTGCCAC TACTTGGAGT GGATCAGGGA AACCATGAAG AGGAACTTGC 841 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 901 aac