Construct: ORF ccsbBroadEn_08644
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012512.1_s300c1, BRDN0000391455
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC2A9 (56606)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | NM_020041.3 | 99.6% | 99.4% | (many diffs) |
| 2 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513859.3 | 98.9% | 98.1% | (many diffs) |
| 3 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513860.3 | 98.8% | 98.3% | (many diffs) |
| 4 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_006713968.4 | 93.7% | 94.1% | (many diffs) |
| 5 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | NM_001001290.1 | 91.4% | 90.9% | (many diffs) |
| 6 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_017008458.2 | 88.9% | 86.2% | (many diffs) |
| 7 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513861.3 | 88.7% | 86.4% | (many diffs) |
| 8 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_017008457.2 | 88.1% | 87.5% | (many diffs) |
| 9 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_024454152.1 | 84.8% | 77.8% | (many diffs) |
| 10 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513856.3 | 83.8% | 78.3% | (many diffs) |
| 11 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_024454150.1 | 83.2% | 77.5% | (many diffs) |
| 12 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513865.2 | 82.1% | 79.8% | (many diffs) |
| 13 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_024454153.1 | 80.3% | 79% | (many diffs) |
| 14 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513866.2 | 79.9% | 78.7% | (many diffs) |
| 15 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XR_925341.3 | 77.6% | (many diffs) | |
| 16 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513857.1 | 76.8% | 71% | (many diffs) |
| 17 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513858.1 | 76.8% | 71% | (many diffs) |
| 18 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_006713969.2 | 74.2% | 71.4% | (many diffs) |
| 19 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_017008460.2 | 74.1% | 74.6% | (many diffs) |
| 20 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513868.2 | 73.2% | 68% | (many diffs) |
| 21 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_024454151.1 | 63.2% | 57.9% | (many diffs) |
| 22 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513864.2 | 62% | 56.6% | (many diffs) |
| 23 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513862.3 | 61.7% | 56.7% | (many diffs) |
| 24 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_017008459.1 | 59.2% | 53.8% | (many diffs) |
| 25 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513867.3 | 54% | 48.7% | (many diffs) |
| 26 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XR_001741291.1 | 44.1% | (many diffs) | |
| 27 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XR_001741290.1 | 30.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1689
- ORF length:
- 1620
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCAAGGAAA CNAAATAGGA ATTCCAAGGA ACTGGGCCTA GTTCCCCTCA 121 CAGATGACAC CAGCCACGCC AGGCCTCCAG GGCCAGGGAG GGCACTGCTG GAGTGTGACC 181 ACCTGAGGAG TGGGGTGCCA GGTGGAAGGA GAAGAAAGGA CTGGTCCTGC TCGCTCCTCG 241 TGGCCTCCCT CGCGGGCGCC TTCGGCTCCT CCTTCCTCTA CGGCTACAAC CTGTCGGTGG 301 TGAATGCCCC CACCCCGTAC ATCAAGGCCT TTTACAATGA GTCATGGGAA AGAAGGCATG 361 GACGTCCAAT AGACCCAGAC ACTCTGACTC TGCTCTGGTC TGTGACTGTG TCCATATTCG 421 CCATCGGTGG ACTTGTGGGG ACATTAATTG TGAAGATGAT TGGAAAGGTT CTTGGGAGGA 481 AGCACACTTT GCTGGCCAAT AATGGGTTTG CAATTTCTGC TGCATTGCTG ATGGCCTGCT 541 CGCTCCAGGC AGGAGCCTTT GAAATGCTCA TCGTGGGACG CTTCATCATG GGCATAGATG 601 GAGGCGTCGC CCTCAGTGTG CTCCCCATGT ACCTCAGTGA GATCTCACCC AAGGAGATCC 661 GTGGCTCTCT GGGGCAGGTG ACTGCCATCT TTATCTGCAT TGGCGTGTTC ACTGGGCAGC 721 TTCTGGGCCT GCCCGAGCTG CTGGGAAAGG AGAGTACCTG GCCATACCTG TTTGGAGTGA 781 TTGTGGTCCC TGCCGTTGTC CAGCTGCTGA GCCTTCCCTT TCTCCCGGAC AGCCCACGCT 841 ACCTGCTCTT GGAGAAGCAC AACGAGGCAA GAGCTGTGAA AGCCTTCCAA ACGTTCTTGG 901 GTAAAGCAGA CGTTTCCCAA GAGGTAGAGG AGGTCCTGGC TGAGAGCCGC GTGCAGAGGA 961 GCATCCGCCT GGTGTCCGTG CTGGAGCTGC TGAGAGCTCC CTACGTCCGC TGGCAGGTGG 1021 TCACCGTGAT TGTCACCATG GCCTGCTACC AGCTCTGTGG CCTCAATGCA ATTTGGTTCT 1081 ATACCAACAG CATCTTTGGA AAAGCTGGGA TCCCTCTGGC AAAGATCCCA TACGTCACCT 1141 TGAGTACAGG GGGCATCGAG ACTTTGGCTG CCGTCTTCTC TGGTTTGGTC ATTGAGCACC 1201 TGGGACGGAG ACCCCTCCTC ATTGGTGGCT TTGGGCTCAT GGGCCTCTTC TTTGGGACCC 1261 TCACCATCAC GCTGACCCTG CAGGACCACG CCCCCTGGGT CCCCTACCTG AGTATCGTGG 1321 GCATTCTGGC CATCATCGCC TCTTTCTGCA GTGGGCCAGG TGGCATCCCG TTCATCTTGA 1381 CTGGTGAGTT CTTCCAGCAA TCTCAGCGGC CGGCTGCCTT CATCATTGCA GGCACCGTCA 1441 ACTGGCTCTC CAACTTTGCT GTTGGGCTCC TCTTCCCATT CATTCAGAAA AGTCTGGACA 1501 CCTACTGTTT CCTAGTCTTT GCTACAATTT GTATCACAGG TGCTATCTAC CTGTATTTTG 1561 TGCTGCCTGA GACCAAAAAC AGAACCTATG CAGAAATCAG CCAGGCATTT TCCAAAAGGA 1621 ACAAAGCATA CCCACCAGAA GAGAAAATCG ACTCAGCTGT CACTGATGGT AAGATAAATG 1681 GAAGGCCTTT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1741 tttgttgcaa cgaac