Construct: ORF ccsbBroadEn_08664
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012710.1_s300c1, BRDN0000397940
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NMUR2 (56923)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56923 | NMUR2 | neuromedin U receptor 2 | NM_020167.4 | 99.9% | 99.7% | 1183G>A |
| 2 | human | 56923 | NMUR2 | neuromedin U receptor 2 | XM_011537670.2 | 75.6% | 75.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1311
- ORF length:
- 1245
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC AGGGATGGAA AAACTTCAGA ATGCTTCCTG GATCTACCAG CAGAAACTAG 121 AAGATCCATT CCAGAAACAC CTGAACAGCA CCGAGGAGTA TCTGGCCTTC CTCTGCGGAC 181 CTCGGCGCAG CCACTTCTTC CTCCCCGTGT CTGTGGTGTA TGTGCCAATT TTTGTGGTGG 241 GGGTCATTGG CAATGTCCTG GTGTGCCTGG TGATTCTGCA GCACCAGGCT ATGAAGACGC 301 CCACCAACTA CTACCTCTTC AGCCTGGCGG TCTCTGACCT CCTGGTCCTG CTCCTTGGAA 361 TGCCCCTGGA GGTCTATGAG ATGTGGCGCA ACTACCCTTT CTTGTTCGGG CCCGTGGGCT 421 GCTACTTCAA GACGGCCCTC TTTGAGACCG TGTGCTTCGC CTCCATCCTC AGCATCACCA 481 CCGTCAGCGT GGAGCGCTAC GTGGCCATCC TACACCCGTT CCGCGCCAAA CTGCAGAGCA 541 CCCGGCGCCG GGCCCTCAGG ATCCTCGGCA TCGTCTGGGG CTTCTCCGTG CTCTTCTCCC 601 TGCCCAACAC CAGCATCCAT GGCATCAAGT TCCACTACTT CCCCAATGGG TCCCTGGTCC 661 CAGGTTCGGC CACCTGTACG GTCATCAAGC CCATGTGGAT CTACAATTTC ATCATCCAGG 721 TCACCTCCTT CCTATTCTAC CTCCTCCCCA TGACTGTCAT CAGTGTCCTC TACTACCTCA 781 TGGCACTCAG ACTAAAGAAA GACAAATCTC TTGAGGCAGA TGAAGGGAAT GCAAATATTC 841 AAAGACCCTG CAGAAAATCA GTCAACAAGA TGCTGTTTGT CTTGGTCTTA GTGTTTGCTA 901 TCTGTTGGGC CCCGTTCCAC ATTGACCGAC TCTTCTTCAG CTTTGTGGAG GAGTGGAGTG 961 AATCCCTGGC TGCTGTGTTC AACCTCGTCC ATGTGGTGTC AGGTGTCTTC TTCTACCTGA 1021 GCTCAGCTGT CAACCCCATT ATCTATAACC TACTGTCTCG CCGCTTCCAG GCAGCATTCC 1081 AGAATGTGAT CTCTTCTTTC CACAAACAGT GGCACTCCCA GCATGACCCA CAGTTGCCAC 1141 CTGCCCAGCG GAACATCTTC CTGACAGAAT GCCACTTTGT GGAGCTGACC GAAGATATAG 1201 GTCCCCAATT CCCATGTCAG TCATCCATGC ACAACTCTCA CCTCCCAACA GCCCTCTCTA 1261 GTGAACAGAT GTCAAGAACA AACTATCAAA GCTTCCACTT TAACAAAACC TGCCCAACTT 1321 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac