Construct: ORF ccsbBroadEn_08688
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009741.1_s300c1, BRDN0000385730
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RSRP1 (57035)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57035 | RSRP1 | arginine and serine rich pr... | NM_001321772.1 | 99.8% | 99.6% | 716A>G |
| 2 | human | 57035 | RSRP1 | arginine and serine rich pr... | NM_020317.5 | 99.8% | 99.6% | 716A>G |
| 3 | human | 57035 | RSRP1 | arginine and serine rich pr... | XM_011541797.1 | 99.8% | 99.6% | 716A>G |
| 4 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135785.1 | 56.2% | (many diffs) | |
| 5 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135783.1 | 56.1% | (many diffs) | |
| 6 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135782.1 | 47.7% | (many diffs) | |
| 7 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135144.1 | 41.1% | (many diffs) | |
| 8 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135781.1 | 40.6% | (many diffs) | |
| 9 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135778.1 | 36.7% | (many diffs) | |
| 10 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135780.1 | 35.1% | (many diffs) | |
| 11 | human | 57035 | RSRP1 | arginine and serine rich pr... | XR_946709.2 | 31.6% | (many diffs) | |
| 12 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135786.2 | 28.5% | (many diffs) | |
| 13 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135784.2 | 28.4% | (many diffs) | |
| 14 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135787.1 | 27.6% | (many diffs) | |
| 15 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135777.1 | 26.8% | (many diffs) | |
| 16 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135143.1 | 26.4% | (many diffs) | |
| 17 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135788.1 | 26% | (many diffs) | |
| 18 | human | 57035 | RSRP1 | arginine and serine rich pr... | NR_135789.1 | 20% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 936
- ORF length:
- 870
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC CAACTACGTG AACGACATGT GGCCGGGCTC GCCGCAGGAG AAGGATTCGC 121 CCTCGACCTC GCGGTCGGGC GGGTCCAGCC GGCTGTCGTC GCGGTCTAGG AGCCGCTCTT 181 TTTCCAGAAG CTCTCGGTCC CATTCCCGCG TCTCGAGCCG GTTTTCGTCC AGGAGTCGGA 241 GGAGCAAGTC CAGGTCCCGT TCCCGAAGGC GCCACCAGCG GAAGTACAGG CGCTACTCGC 301 GGTCATACTC GCGGAGCCGG TCGCGATCCC GCAGCCGCCG TTACCGAGAG AGGCGCTACG 361 GGTTCACCAG GAGATACTAC CGGTCTCCTT CGCGGTACCG GTCCCGGTCC CGTAGCAGGT 421 CGCGCTCTCG GGGAAGGTCG TACTGCGGAA GGGCGTACGC GATCGCGCGG GGACAGCGCT 481 ACTACGGCTT TGGTCGCACA GTGTACCCGG AGGAGCACAG CAGATGGAGG GACAGATCCA 541 GGACGAGGTC GCGGAGCAGA ACCCCCTTTC GCTTAAGTGA AAAAGATCGA ATGGAGCTGT 601 TAGAAATAGC AAAAACCAAT GCAGCGAAAG CTCTAGGAAC AACCAACATT GACTTGCCAG 661 CTAGTCTCAG AACTGTTCCT TCAGCCAAAG AAACAAGCCG TGGAATAGGT GTATCAAGTA 721 ATGGTGCAAA GCCTGAACTG TCGGAAAAGG TAACAGAAGA TGGAACTCGA AATCCCAATG 781 GAAAACCTAC CCAGCAAAGA AGCATAGCTT TTAGCTCTAA TAATTCTGTA GCAAAGCCAA 841 TACAAAAATC AGCTAAAGCT GCCACAGAAG AGGCATCTTC AAGATCACCA AAAATAGATC 901 AGAAAAAAAG TCCATATGGA CTGTGGATAC CTATCTACCC AACTTTCTTG TACAAAGTtg 961 gcattataag aaagcattgc ttatcaattt gttgcaacga ac