Construct: ORF ccsbBroadEn_08693

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004647.1_s300c1, BRDN0000398281
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DAZ2 (57055)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57055 DAZ2 deleted in azoospermia 2 NM_001005785.2 99.9% 99.8% 1073A>N
2 human 57055 DAZ2 deleted in azoospermia 2 NM_020363.3 95.6% 95.5% 913_984del;1145A>N
3 human 57135 DAZ4 deleted in azoospermia 4 XM_011531510.1 86.4% 86.3% (many diffs)
4 human 57054 DAZ3 deleted in azoospermia 3 NM_020364.3 81% 80.3% (many diffs)
5 human 57135 DAZ4 deleted in azoospermia 4 XM_011531509.3 79% 78.9% (many diffs)
6 human 57135 DAZ4 deleted in azoospermia 4 NM_001005375.2 79% 59% (many diffs)
7 human 57135 DAZ4 deleted in azoospermia 4 XM_005262602.1 73.5% 73.4% (many diffs)
8 human 57135 DAZ4 deleted in azoospermia 4 NM_020420.3 72.9% 73% 504C>T;993_994ins432
9 human 57055 DAZ2 deleted in azoospermia 2 NM_001005786.2 68.4% 68.3% 663T>A;682_683ins504
10 human 1617 DAZ1 deleted in azoospermia 1 XM_011531482.2 66.2% 50.7% (many diffs)
11 human 1617 DAZ1 deleted in azoospermia 1 XM_011531483.1 63.6% 63.6% (many diffs)
12 human 1617 DAZ1 deleted in azoospermia 1 NM_004081.5 61.9% 47.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1671
ORF length:
1602
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCTGCTGCA AATCCTGAGA CTCCAAACTC AACCATCTCC AGAGAGGCCA
121GCACCCAGTC TTCATCAGCT GCAGCTAGCC AAGGCTGGGT GTTACCAGAA GGCAAAATCG
181TGCCAAACAC TGTTTTTGTT GGTGGAATTG ATGCTAGGAT GGATGAAACT GAGATTGGAA
241GCTGCTTTGG TAGATACGGT TCAGTGAAAG AAGTGAAGAT AATCACGAAT CGAACTGGTG
301TGTCCAAAGG CTATGGATTT GTTTCGTTTG TTAATGACGT GGATGTCCAG AAGATAGTAG
361GATCACAGAT ACATTTCCAT GGTAAAAAGC TGAAGCTGGG CCCTGCAATC AGGAAACAAA
421AGTTATGTGC TCGTCATGTG CAGCCACGTC CTTTGGTAGT TAATCCTCCT CCTCCACCAC
481AGTTTCAGAA CGTCTGGCGG AATCCAAACA CTGAAACCTA CCTGCAGCCC CAAATCACGC
541CGAATCCTGT AACTCAGCAC GTTCAGGCTT ATTCTGCTTA TCCACATTCA CCAGGTCAGG
601TCATCACTGG ATGTCAGTTG CTTGTATATA ATTATCAGGA ATATCCTACT TATCCCGATT
661CAGCATTTCA GGTCACCACT GGATATCAGT TGCCTGTATA TAATTATCAG CCATTTCCTG
721CTTATCCAAG ATCACCATTT CAGGTCACTG CTGGATATCA GTTGCCTGTA TATAATTATC
781AGGCATTTCC TGCTTATCCA AATTCACCAT TTCAAGTCGC CACTGGATAT CAGTTCCCTG
841TATACAATTA TCAGCCATTT CCTGCTTATC CAAGTTCACC ATTTCAGGTC ACTGCTGGAT
901ATCAGTTGCC TGTATATAAT TATCAGGCAT TTCCTGCTTA TCCAAATTCA CCATTTCAAG
961TCGCCACTGG ATATCAGTTC CCTGTATACA ATTATCAGGC ATTTCCTGCT TATCCAAATT
1021CACCAGTTCA GGTCACCACT GGATATCAGT TGCCTGTATA CAATTATCAG GCATTTCCTG
1081CTTATCCAAG TTCACCATTT CAGGTCACCA CTGGATATCA GTTGCCTGTA TATAATTATC
1141NGGCATTTCC TGCTTATCCA AGTTCACCAT TTCAGGTCAC CACTGGATAT CAGTTGCCTG
1201TATATAATTA TCAGGCATTT CCTGCTTATC CAAGTTCACC ATTTCAGGTC ACCACTGGAT
1261ATCAGTTGCC TGTATATAAT TATCAGGCAT TTCCTGCTTA TCCAAGTTCA CCATTTCAGG
1321TCACCACTGG ATATCAGTTG CCTGTATATA ATTATCAGGC ATTTCCTGCT TATCCAAGTT
1381CACCATTTCA GGTCACCACT GGATATCAGT TGCCTGTATA TAATTATCAG GCATTTCCTG
1441CTTATCCAAG TTCACCATTT CAGGTCACCA CTGGATATCA GTTGCCTGTA TATAATTATC
1501AGGCATTTCC TGCTTATCCA AATTCAGCAG TTCAGGTCAC CACTGGATAT CAGTTCCATG
1561TATACAATTA CCAGATGCCA CCGCAGTGCC CTGTTGGGGA GCAAAGGAGA AATCTGTGGA
1621CCGAAGCATA CAAATGGTGG TATCTTGTCT GTTTAATCCA GAGAAGAGAC TTGCCAACTT
1681TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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