Construct: ORF ccsbBroadEn_08705
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003392.1_s300c1, BRDN0000389229
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD177 (57126)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57126 | CD177 | CD177 molecule | NM_020406.4 | 99.6% | 98.8% | (many diffs) |
| 2 | human | 57126 | CD177 | CD177 molecule | XM_017027022.2 | 93.2% | 91.9% | (many diffs) |
| 3 | human | 57126 | CD177 | CD177 molecule | XM_017027021.2 | 89.6% | 87.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1377
- ORF length:
- 1311
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CCCGGTATTA CTGCTGGCCC TCCTGGGGTT CATCCTCCCA CTGCCAGGAG 121 TGCAGGCGCT GCTCTGCCAG TTTGGGACAG TTCAGCATGT GTGGAAGGTG TCCGACCTGC 181 CCCGGCAATG GACCCCTAAG AACACCAGCT GCGACAGCGG CTTGGGGTGC CAGGACACGT 241 TGATGCTCAT TGAGAGCGGA CCCCAAGTGA GCCTGGTGCT CTCCAAGGGC TGCACGGAGG 301 CCAAGGACCA GGAGCCCCGC GTCACTGAGC ACCGGATGGG CCCCGGCCTC TCCCTGATCT 361 CCTACACCTT CGTGTGCCGC CAGGAGGACT TCTGCAACAA CCTCGTTAAC TCCCTCCCGC 421 TTTGGGCCCC ACAGCCCCCA GCAGACCCAG GATCCTTGAG GTGCCCAGTC TGCTTGTCTA 481 TGGAAGGCTG TCTGGAGGGG ACAACAGAAG AGATCTGCCC CAAGGGGACC ACACACTGTT 541 ATGATGGCCT CCTCAGGCTC AGGGGAGGAG GCATCTTCTC CAATCTGAGA GTCCAGGGAT 601 GCATGCCCCA GCCAGGTTGC AACCTGCTCA ATGGGACACA GGAAATTGGG CCCGTGGGTA 661 TGACTGAGAA CTGCAATAGG AAAGATTTTC TGACCTGTCA TCGGGGGACC ACCATTATGA 721 CACACGGAAA CTTGGCTCAA GAACCCACTG ATTGGACCAC ATCGAATACC GAGATGTGCG 781 AGGTGGGGCA GGTGTGTCAG GAGACGCTGC TGCTCCTAGA TGTAGGACTC ACATCAACCC 841 TGGTGGGGAC AAAAGGCTGC AGCACTGTTG GGGCTCAAAA TTCCCAGAAG ACCACCATCC 901 ACTCAGCCCC TCCTGGGGTG CTTGTGGCCT CCTATACCCA CTTCTGCTCC TCGGACCTGT 961 GCAATAGTGC CAGCAGCAGC AGCGTTCTGC TGAACTCCCT CCCTCCTCAA GCTGCCCCTG 1021 TCCCAGGAGA CCGGCAGTGT CCTACCTGTG TGCAGCCCCT TGGAACCTGT TCAAGTGGCT 1081 CCCCCCGAAT GACCTGCCCC AGGGGCACCA CTCATTGTTA TGATGGGTAC ATTCATCTCT 1141 CAGGAGGTGG GCTGTCCACC AAAATGAGCA TTCAGGGCTG CGTGGCCCAA CCTTCCAGCT 1201 TCTTGTTGAA CCACACCAGA CAAATCGGGA TCTTCTCTGC GCGTGAGAAG CGTGATGTGC 1261 AGCCTCCTGC CTCTCAGCAT GAGGGAGGTG GGGCTGAGGG CCTGGAGTCT CTCACTTGGG 1321 GGGTGGGGCT GGCACTGGCC CCAGCGCTGT GGTGGGGAGT GGTTTGCCCT TCCTGCTACC 1381 AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt gttgcaacga 1441 ac