Construct: ORF ccsbBroadEn_08718

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010636.1_s300c1, BRDN0000398283
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VANGL2 (57216)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57216 VANGL2 VANGL planar cell polarity ... NM_020335.3 99.9% 100% 1137A>G
2 human 57216 VANGL2 VANGL planar cell polarity ... XM_005245357.1 99.9% 100% 1137A>G
3 human 57216 VANGL2 VANGL planar cell polarity ... XM_011509804.1 99.9% 100% 1137A>G
4 human 57216 VANGL2 VANGL planar cell polarity ... XM_011509805.3 51.7% 52.2% (many diffs)
5 mouse 93840 Vangl2 vang-like 2 (van gogh, Dros... NM_033509.4 89.9% 99.4% (many diffs)
6 mouse 93840 Vangl2 vang-like 2 (van gogh, Dros... XM_006497051.3 89.9% 99.4% (many diffs)
7 mouse 93840 Vangl2 vang-like 2 (van gogh, Dros... XM_006497052.3 89.9% 99.4% (many diffs)
8 mouse 93840 Vangl2 vang-like 2 (van gogh, Dros... XM_006497053.3 89.9% 99.4% (many diffs)
9 mouse 93840 Vangl2 vang-like 2 (van gogh, Dros... XM_006497054.3 89.9% 99.4% (many diffs)
10 mouse 93840 Vangl2 vang-like 2 (van gogh, Dros... XM_017313008.1 89.9% 99.4% (many diffs)
11 mouse 93840 Vangl2 vang-like 2 (van gogh, Dros... XM_006497055.2 45.2% 50.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1632
ORF length:
1563
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGACACCGAG TCCCAGTACT CGGGCTATTC CTACAAGTCG GGCCACTCCC
121GCAGCTCCCG CAAGCACAGG GACCGCCGGG ACCGACACCG CTCTAAGAGT CGAGATGGGG
181GCCGAGGGGA CAAGTCGGTG ACAATCCAGG CTCCCGGGGA GCCCCTGCTG GACAATGAGT
241CCACACGAGG GGATGAGCGG GATGACAACT GGGGGGAAAC GACGACAGTA GTAACGGGCA
301CCTCAGAGCA CAGCATCTCC CATGATGACC TCACACGCAT CGCCAAGGAC ATGGAGGACA
361GTGTCCCTCT GGACTGCTCC CGTCACCTGG GTGTGGCAGC GGGGGCCACC CTGGCACTGC
421TGTCTTTCCT CACGCCTCTG GCCTTCCTGC TGCTGCCCCC ACTGCTGTGG CGGGAGGAGC
481TGGAGCCTTG CGGGACGGCC TGCGAGGGCC TCTTCATCTC TGTCGCCTTC AAGCTGCTCA
541TCCTGCTACT GGGCAGCTGG GCTCTGTTCT TCCGCCGGCC CAAGGCCTCG CTGCCCCGCG
601TCTTTGTGCT GCGTGCCCTG CTTATGGTGC TGGTTTTCCT GCTCGTGGTC TCCTACTGGC
661TCTTCTATGG TGTGCGCATC CTGGATGCTC GGGAGCGCAG CTACCAGGGC GTGGTGCAGT
721TCGCCGTGTC GCTGGTGGAC GCCCTTCTTT TCGTGCACTA CCTGGCCGTG GTCCTGCTGG
781AGCTGCGCCA GCTCCAGCCT CAGTTCACGC TCAAGGTCGT GCGCTCCACC GACGGCGCCA
841GCCGCTTCTA CAACGTTGGC CATCTCAGCA TCCAGCGCGT GGCAGTGTGG ATCCTGGAGA
901AGTATTACCA TGACTTCCCT GTCTACAACC CTGCCCTCCT CAACCTGCCC AAGTCCGTCC
961TGGCCAAGAA AGTGTCTGGC TTCAAGGTGT ATTCCCTCGG AGAGGAAAAC AGCACCAACA
1021ACTCCACTGG CCAGTCTCGG GCTGTGATTG CAGCGGCAGC TCGGAGGCGG GACAACAGTC
1081ACAATGAGTA CTACTATGAG GAGGCTGAGC ATGAGCGAAG GGTGCGCAAG AGGAGGGCCA
1141GGCTTGTAGT GGCGGTGGAG GAGGCCTTCA CTCACATTAA GCGGCTGCAG GAAGAGGAGC
1201AGAAGAACCC CAGGGAGGTG ATGGACCCCC GGGAGGCAGC CCAAGCCATC TTTGCATCCA
1261TGGCCCGTGC CATGCAGAAG TACCTTCGGA CCACCAAGCA GCAGCCCTAC CACACCATGG
1321AGAGCATCCT GCAGCACCTT GAATTCTGCA TCACGCATGA CATGACGCCC AAGGCCTTCT
1381TGGAGCGATA CTTGGCGGCT GGACCTACCA TCCAGTACCA CAAGGAACGC TGGCTGGCCA
1441AACAGTGGAC ATTGGTGAGC GAGGAGCCGG TGACCAACGG CCTCAAGGAT GGCATCGTTT
1501TCCTCTTAAA ACGCCAGGAC TTCAGCCTGG TGGTCAGCAC CAAGAAGGTC CCATTCTTCA
1561AACTCTCCGA GGAATTTGTG GATCCCAAGT CACACAAGTT TGTCATGAGG CTGCAGTCTG
1621AGACCTCAGT GTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1681caatttgttg caacgaac

Download FASTA (ORF) (Full)

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