Construct: ORF ccsbBroadEn_08753

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000783.1_s300c1, BRDN0000394387
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
POGK (57645)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57645 POGK pogo transposable element d... NM_017542.5 99.9% 99.8% 1827C>A
2 human 57645 POGK pogo transposable element d... XM_005245370.4 99.9% 99.8% 1827C>A
3 human 57645 POGK pogo transposable element d... XM_011509814.2 99.9% 99.8% 1827C>A
4 human 57645 POGK pogo transposable element d... XM_017001914.2 99.9% 99.8% 1827C>A
5 human 57645 POGK pogo transposable element d... XM_011509815.2 96.9% 96.8% 1154_1155ins54;1773C>A
6 human 57645 POGK pogo transposable element d... NM_001314014.2 80.5% 80.2% 1_1delAins353;3_4insCA;1473C>A
7 human 57645 POGK pogo transposable element d... XM_017001915.1 80.5% 80.2% 1_1delAins353;3_4insCA;1473C>A
8 mouse 71592 Pogk pogo transposable element w... NM_175170.4 85.9% 89.9% (many diffs)
9 mouse 71592 Pogk pogo transposable element w... NM_001142948.1 84.3% 88.2% (many diffs)
10 mouse 71592 Pogk pogo transposable element w... XM_017312357.1 79.9% 84.2% (many diffs)
11 mouse 71592 Pogk pogo transposable element w... XM_011238869.2 70.3% 74.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1896
ORF length:
1827
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGTCCACA GCCTACCCTC TCAATTTGAG CCTGAAAGAA GAGGAAGAGG
121AAGAAGAGAT TCAGAGCCGG GAACTAGAGG ACGGCCCGGC AGACATGCAG AAAGTACGAA
181TCTGCTCTGA GGGCGGATGG GTACCGGCCC TATTTGATGA GGTGGCCATA TATTTTTCCG
241ATGAGGAATG GGAAGTTTTG ACGGAGCAAC AAAAGGCCCT CTACCGGGAA GTCATGAGGA
301TGAATTATGA AACTGTCCTG TCCCTGGAAT TCCCATTCCC TAAGCCAGAC ATGATCACCC
361GTTTGGAAGG GGAGGAGGAG TCTCAGAATT CTGACGAGTG GCAGCTCCAA GGAGGCACCT
421CTGCAGAAAA TGAAGAATCT GACGTAAAGC CTCCAGACTG GCCAAACCCA ATGAATGCTA
481CCTCCCAGTT TCCTCAGCCT CAGCACTTTG ACAGCTTTGG CCTCCGTCTG CCTCGGGATA
541TCACAGAGCT GCCCGAGTGG AGTGAGGGGT ACCCCTTCTA CATGGCCATG GGCTTCCCAG
601GGTATGACCT CTCGGCTGAT GACATAGCTG GGAAGTTTCA GTTCAGCCGG GGCATGCGCC
661GCAGTTACGA CGCAGGGTTC AAGCTGATGG TAGTGGAATA TGCTGAGAGT ACCAACAACT
721GCCAGGCTGC CAAGCAGTTT GGAGTATTGG AAAAAAACGT TCGAGACTGG CGCAAAGTGA
781AGCCACAGCT TCAAAACGCC CACGCCATGC GGCGGGCATT CCGAGGCCCC AAGAATGGGA
841GGTTTGCTCT GGTGGACCAG CGTGTGGCCG AATATGTCAG ATACATGCAG GCCAAAGGGG
901ACCCCATCAC CCGGGAGGCG ATGCAGCTGA AAGCTCTCGA AATCGCCCAG GAAATGAACA
961TTCCAGAGAA AGGGTTCAAG GCAAGCTTGG GTTGGTGTCG AAGAATGATG AGAAGGTATG
1021ACCTGTCTCT GAGGCATAAA GTGCCCGTGC CCCAGCACCT GCCGGAAGAC CTGACTGAGA
1081AACTCGTCAC TTACCAGCGC AGTGTCCTGG CTCTGCGCAG GGCGCATGAC TATGAGGTAG
1141CTCAGATGGG GAATGCAGAT GAGACGCCCA TTTGTTTAGA GGTGCCATCA CGGGTAACTG
1201TTGATAACCA GGGCGAAAAG CCTGTCTTGG TCAAGACACC AGGCAGGGAA AAACTGAAAA
1261TCACAGCAAT GCTTGGTGTC TTGGCTGATG GGAGGAAGTT ACCACCGTAC ATCATTTTGA
1321GGGGAACATA TATCCCCCCG GGGAAGTTTC CCAGTGGGAT GGAAATTCGC TGCCACCGGT
1381ATGGGTGGAT GACTGAAGAC TTGATGCAGG ACTGGTTGGA AGTGGTGTGG AGACGGAGGA
1441CAGGAGCAGT GCCCAAGCAG CGAGGGATGC TGATCTTGAA TGGCTTCCGG GGCCATGCCA
1501CAGATTCCGT GAAGAACTCC ATGGAAAGCA TGAACACTGA CATGGTGATC ATCCCAGGGG
1561GTCTGACCTC ACAGCTTCAG GTGCTGGATG TCGTGGTCTA CAAGCCACTG AATGACAGTG
1621TGCGGGCCCA GTACTCCAAC TGGCTTCTGG CTGGGAACCT GGCGCTGAGC CCAACCGGGA
1681ATGCTAAGAA GCCACCCCTG GGCCTCTTTC TGGAGTGGGT CATGGTCGCG TGGAATAGCA
1741TCTCAAGTGA GTCCATCGTC CAAGGGTTCA AGAAGTGCCA TATCTCCAGC AACTTGGAGG
1801AGGAAGACGA TGTCCTGTGG GAAATCGAGA GTGAGTTGCC AGGAGGAGGA GAACCACCAA
1861AAGATTGTGA CACCGAAAGC ATGGCTGAGA GCAAATTGCC AACTTTCTTG TACAAAGTtg
1921gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

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