Construct: ORF ccsbBroadEn_08754
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006306.1_s300c1, BRDN0000457310
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZBTB4 (57659)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57659 | ZBTB4 | zinc finger and BTB domain ... | NM_001128833.2 | 99.9% | 99.8% | 562C>T;2020C>T |
| 2 | human | 57659 | ZBTB4 | zinc finger and BTB domain ... | NM_020899.4 | 99.9% | 99.8% | 562C>T;2020C>T |
| 3 | human | 57659 | ZBTB4 | zinc finger and BTB domain ... | XM_006721563.3 | 99.9% | 99.8% | 562C>T;2020C>T |
| 4 | human | 57659 | ZBTB4 | zinc finger and BTB domain ... | XM_006721564.2 | 99.9% | 99.8% | 562C>T;2020C>T |
| 5 | human | 57659 | ZBTB4 | zinc finger and BTB domain ... | XM_011523972.2 | 99.9% | 99.8% | 562C>T;2020C>T |
| 6 | mouse | 75580 | Zbtb4 | zinc finger and BTB domain ... | NM_029348.2 | 83.2% | 85.4% | (many diffs) |
| 7 | mouse | 75580 | Zbtb4 | zinc finger and BTB domain ... | XM_006534389.3 | 83.2% | 85.4% | (many diffs) |
| 8 | mouse | 75580 | Zbtb4 | zinc finger and BTB domain ... | XM_006534390.3 | 83.2% | 85.4% | (many diffs) |
| 9 | mouse | 75580 | Zbtb4 | zinc finger and BTB domain ... | XM_006534391.3 | 83.2% | 85.4% | (many diffs) |
| 10 | mouse | 75580 | Zbtb4 | zinc finger and BTB domain ... | XM_006534392.3 | 83.2% | 85.4% | (many diffs) |
| 11 | mouse | 75580 | Zbtb4 | zinc finger and BTB domain ... | XM_006534393.3 | 83.2% | 85.4% | (many diffs) |
| 12 | mouse | 75580 | Zbtb4 | zinc finger and BTB domain ... | XM_006534394.3 | 83.2% | 85.4% | (many diffs) |
| 13 | mouse | 75580 | Zbtb4 | zinc finger and BTB domain ... | XM_011249293.2 | 83.2% | 85.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3105
- ORF length:
- 3039
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CCCCCCTGCA GAGGTGACGG ACCCGTCCCA TGCCCCCGCC GTCCTGCGCC 121 AGCTCAATGA ACAGCGGCTC CGTGGCCTCT TCTGTGACGT CACCCTCATA GCCGGAGACA 181 CCAAGTTCCC TGCTCACCGC AGCGTCCTGG CTGCTTCAAG TCCCTTCTTC AGAGAGGCCC 241 TGCTCACTTC AGCCCCACTA CCCCTTCCAC CAGCTACTGG GGGCGCCGCA CCCAACCCTG 301 CCACCACCAC AGCTGCCTCT TCCTCCTCCT CCTCTTCCTC GTCTTCTTCC TCTTCTTCCT 361 CCTCTGCTTC TTCTTCTTCT TCCTCTTCCT CTTCCTCTCC CCCTCCAGCC TCTCCCCCTG 421 CTTCTTCCCC ACCCCGGGTC CTGGAGTTGC CAGGAGTCCC AGCAGCTGCG TTTTCTGATG 481 TCCTCAACTT CATCTACAGC GCCCGGCTCG CACTGCCTGG TGGTGGAGGG GACGGGGCAG 541 CTGTAGCAGA GATTGGAGCT TTGGGGCGCC GTCTGGGCAT CTCCCGCCTT CAGGGCCTGG 601 GGGAGGGAGG TGATGCCTGG GTACCTTCTA CCCCAGCCCC CATGGCCACC TCGCAGCCTG 661 AAGAGGACAG CTTTGGGCCC GGGCCCAGGC CAGCTGGGGA GTGGGAGGGT GACAGGGCTG 721 AGGCCCAGGC CCCTGACTTG CAGTGCTCCC TGCCCCGGCG GCCCCTCCCC TGCCCCCAGT 781 GTGGAAAAAG CTTCATCCAT CCCAAACGGC TGCAGACCCA TGAGGCCCAG TGCCGACGAG 841 GGGCCAGCAC GCGGGGGTCT ACAGGGCTGG GAGCTGGGGG CGCTGGCCCT GGTGGTCCTG 901 CAGGGGTGGA CGCCTCAGCC CTGCCTCCAC CAGTGGGCTT CCGAGGGGGC CCCGAGCACG 961 TGGTGAAGGT GGTGGGCGGC CACGTGCTGT ATGTGTGCGC GGCCTGCGAG CGTTCCTACG 1021 TGACCCTGTC CAGTCTGAAG AGACACAGCA ATGTACACTC GTGGCGGAGG AAGTACCCCT 1081 GCCGCTATTG TGAGAAAGTG TTTGCTCTGG CGGAGTACCG CACGAAGCAT GAAGTGTGGC 1141 ACACGGGGGA GCGCAGGTAC CAGTGCATCT TCTGTTGGGA GACCTTTGTC ACTTACTATA 1201 ACCTGAAGAC CCACCAGCGA GCCTTCCACG GCATTAGCCC GGGCCTCCTT GCCAGTGAGA 1261 AGACACCCAA TGGAGGCTAC AAGCCCAAGC TCAATACACT CAAGCTCTAC CGCCTGCTCC 1321 CCATGCGGGC AGCCAAGCGG CCCTACAAGA CCTACAGCCA GGGAGCCCCG GAGGCTCCCC 1381 TTTCTCCAAC CCTCAACACA CCGGCCCCTG TGGCAATGCC AGCCAGCCCG CCGCCTGGGC 1441 CTCCACCTGC CCCAGAGCCT GGCCCTCCAC CCTCTGTCAT CACTTTTGCC CACCCAGCCC 1501 CCTCTGTCAT TGTCCATGGG GGCAGTAGCA GTGGTGGAGG GGGGAGTGGG ACGGCCAGCA 1561 CAGGAGGGTC CCAAGCTGCC TCGGTTATCA CTTACACTGC TCCCCCGAGG CCACCCAAGA 1621 AACGAGAATA CCCACCTCCT CCCCCTGAGC CTGCAGCCAC ACCCACCAGC CCAGCCACAG 1681 CAGTCAGCCC AGCCACCGCT GCAGGGCCAG CCATGGCCAC CACCACGGAG GAGGCCAAGG 1741 GCCGGAATCC ACGGGCTGGA AGGACTCTGA CTTACACAGC CAAGCCAGTG GGCGGGATTG 1801 GTGGAGGTGG GGGTCCCCCC ACAGGGGCTG GCCGGGGCCC CTCTCAGCTG CAGGCTCCAC 1861 CTCCACTGTG TCAGATCACT GTGCGAATAG GGGAGGAGGC CATCGTCAAG CGCCGCATCT 1921 CAGAGACTGA CCTGCGTCCT GGGGAGCTGA GCGGAGAGGA GATGGAGGAG AGTGAGGAGG 1981 ACGAAGAGGA GGAGGACGAA GAGGAGGAGG AGGAGGATGA GGAGGAATCA AAGGCTGGTG 2041 GGGAGGACCA GCTCTGGAGG CCCTACTACT CCTACAAGCC TAAGTGCAAG GCTGGAGCTG 2101 CTGGAGGTGC CAGTGTGGGG GGCAGTGGGC TGCCCCGAGG CCGCCGGCCA CCACGTTGGA 2161 GGCAGAAGCT GGAACGGAGG AGCTGGGAGG AAACCCCAGC GGCCGAGAGC CCAGCGGGAC 2221 GTGCCCGCAC AGAGCGGAGG CACCGATGCG GGGACTGTGC CCAGACCTTC ACCACCCTGA 2281 GAAAGCTGCG GAAGCACCAA GAGGCCCACG GTGGGGGCTC CCACAGCTCC CGGGCCGGAC 2341 GGAGGCCCTC CACCCGCTTT ACCTGCCCCC ACTGCGCCAA GGTGTGCAAG ACCGCAGCTG 2401 CCCTGAGCCG CCACGGGCAG AGGCATGCTG CTGAGCGGCC CGGGGGCACC CCAACCCCTG 2461 TCATTGCCTA TTCCAAGGGC AGCGCTGGCA CCAGGCCCGG GGATGTCAAG GAGGAAGCCC 2521 CCCAAGAGAT GCAAGTCTCC TCATCCAGCG GTGAGGCAGG TGGCGGGAGC ACTGCTGCTG 2581 AGGAAGCTTC CGAGACCGCC TCACTCCAGG ACCCTATCAT TTCAGGGGGT GAGGAGCCCC 2641 CAGTAGTGGC AAGCGGGGGC AGCTATGTAT ACCCACCTGT GCAGGAATTT CCACTGGCCT 2701 TGATTGGGGG CGGCCGGGAA CCTGGCGGTG GCAGGGGAAA ATCTGGGAGT GAAGGGCCAG 2761 TGGGGGCTGG TGAGGGGGAC CGGATGGAGG GGATAGGGGC TGCCAAAGTC ACTTTCTACC 2821 CTGAGCCCTA CCCGCTCGTC TATGGCCCCC AGCTCCTTGC CGCCTACCCT TACAACTTCA 2881 GTAACTTGGC CGCTCTCCCG GTTGCTCTCA ACATGGTCCT ACCTGATGAG AAGGGTGCGG 2941 GGGCCCTTCC CTTCCTACCA GGGGTCTTTG GCTACGCAGT GAATCCTCAA GCAGCACCCC 3001 CTGCCCCACC AACACCACCT CCCCCAACTC TTCCTCCACC AATTCCCCCT AAGGGAGAAG 3061 GGGAAAGGGC AGGGGTTGAG AGAACCCAGA AGGGCGATGT GGGGTGCCCA ACTTTCTTGT 3121 ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c