Construct: ORF ccsbBroadEn_08782
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013148.1_s300c1, BRDN0000385728
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX6 (58533)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 58533 | SNX6 | sorting nexin 6 | NM_021249.5 | 99.8% | 100% | 309G>A |
| 2 | human | 58533 | SNX6 | sorting nexin 6 | NM_001366519.1 | 78.5% | 78.5% | 1_237del;546G>A |
| 3 | human | 58533 | SNX6 | sorting nexin 6 | NM_152233.4 | 71.3% | 71.4% | 1_348del;657G>A |
| 4 | human | 58533 | SNX6 | sorting nexin 6 | NR_159358.1 | 26.1% | (many diffs) | |
| 5 | human | 58533 | SNX6 | sorting nexin 6 | NR_159357.1 | 25.2% | (many diffs) | |
| 6 | mouse | 72183 | Snx6 | sorting nexin 6 | XM_006516253.3 | 70.9% | 78.3% | (many diffs) |
| 7 | mouse | 72183 | Snx6 | sorting nexin 6 | NM_026998.3 | 64.4% | 71.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 936
- ORF length:
- 870
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC GAAGGAAGAA TTCACAAAGA TGAAACAGGA ACTGGAAGCT GAATATTTGG 121 CAATATTCAA GAAGACAGTT GCGATGCATG AAGTGTTCCT GTGTCGTGTG GCAGCACATC 181 CTATTTTGAG AAGAGATTTA AATTTCCATG TCTTCTTGGA ATATAATCAA GATTTGAGTG 241 TGCGAGGAAA AAATAAAAAA GAGAAACTTG AAGACTTCTT TAAAAACATG GTTAAATCAG 301 CAGATGGAGT AATCGTTTCA GGAGTAAAGG ATGTAGATGA TTTCTTTGAG CACGAACGAA 361 CATTTCTTTT GGAATATCAT AACCGAGTTA AGGATGCATC TGCTAAATCT GATAGAATGA 421 CAAGATCCCA CAAAAGTGCT GCAGATGATT ACAATAGAAT TGGTTCTTCA TTATATGCTT 481 TAGGAACTCA GGATTCTACA GATATATGCA AGTTTTTTCT CAAAGTTTCA GAACTGTTCG 541 ATAAAACAAG AAAAATAGAA GCACGAGTGT CTGCTGATGA AGACCTCAAA CTTTCTGATC 601 TTTTAAAATA TTACTTAAGA GAATCTCAAG CTGCTAAGGA TCTCCTGTAT CGAAGGTCTA 661 GGTCACTAGT GGATTATGAA AATGCTAATA AAGCACTGGA TAAAGCAAGA GCAAAAAATA 721 AAGATGTTCT ACAGGCCGAA ACTTCCCAAC AATTATGTTG TCAGAAATTT GAAAAAATAT 781 CTGAGTCTGC AAAACAAGAA CTTATAGATT TTAAGACAAG AAGAGTTGCT GCATTCAGAA 841 AAAATTTAGT GGAACTGGCA GAGTTAGAAC TGAAGCATGC AAAGGGTAAT CTACAGTTGC 901 TGCAGAACTG CCTGGCAGTG TTAAATGGAG ACACATACCC AACTTTCTTG TACAAAGTtg 961 gcattataag aaagcattgc ttatcaattt gttgcaacga ac