Construct: ORF ccsbBroadEn_08807

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000565.1_s300c1, BRDN0000391099
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BCAN (63827)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 63827 BCAN brevican NM_021948.5 99.9% 99.8% 1510G>A
2 human 63827 BCAN brevican XM_011509866.1 99.9% 99.8% 1510G>A
3 human 63827 BCAN brevican XM_017002047.1 95.2% 95.1% 1_135del;1645G>A
4 human 63827 BCAN brevican NM_198427.2 72.7% 71.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2799
ORF length:
2733
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCAGCTGTTC CTGCCCCTGC TGGCAGCCCT GGTCCTGGCC CAGGCTCCTG
121CAGCTTTAGC AGATGTTCTG GAAGGAGACA GCTCAGAGGA CCGCGCTTTT CGCGTGCGCA
181TCGCGGGCGA CGCGCCACTG CAGGGCGTGC TCGGCGGCGC CCTCACCATC CCTTGCCACG
241TCCACTACCT GCGGCCACCG CCGAGCCGCC GGGCTGTGCT GGGCTCTCCG CGGGTCAAGT
301GGACTTTCCT GTCCCGGGGC CGGGAGGCAG AGGTGCTGGT GGCGCGGGGA GTGCGCGTCA
361AGGTGAACGA GGCCTACCGG TTCCGCGTGG CACTGCCTGC GTACCCAGCG TCGCTCACCG
421ACGTCTCCCT GGCGCTGAGC GAGCTGCGCC CCAACGACTC AGGTATCTAT CGCTGTGAGG
481TCCAGCACGG CATCGATGAC AGCAGCGACG CTGTGGAGGT CAAGGTCAAA GGGGTCGTCT
541TTCTCTACCG AGAGGGCTCT GCCCGCTATG CTTTCTCCTT TTCTGGGGCC CAGGAGGCCT
601GTGCCCGCAT TGGAGCCCAC ATCGCCACCC CGGAGCAGCT CTATGCCGCC TACCTTGGGG
661GCTATGAGCA ATGTGATGCT GGCTGGCTGT CGGATCAGAC CGTGAGGTAT CCCATCCAGA
721CCCCACGAGA GGCCTGTTAC GGAGACATGG ATGGCTTCCC CGGGGTCCGG AACTATGGTG
781TGGTGGACCC GGATGACCTC TATGATGTGT ACTGTTATGC TGAAGACCTA AATGGAGAAC
841TGTTCCTGGG TGACCCTCCA GAGAAGCTGA CATTGGAGGA AGCACGGGCG TACTGCCAGG
901AGCGGGGTGC AGAGATTGCC ACCACGGGCC AACTGTATGC AGCCTGGGAT GGTGGCCTGG
961ACCACTGCAG CCCAGGGTGG CTAGCTGATG GCAGTGTGCG CTACCCCATC GTCACACCCA
1021GCCAGCGCTG TGGTGGGGGC TTGCCTGGTG TCAAGACTCT CTTCCTCTTC CCCAACCAGA
1081CTGGCTTCCC CAATAAGCAC AGCCGCTTCA ACGTCTACTG CTTCCGAGAC TCGGCCCAGC
1141CTTCTGCCAT CCCTGAGGCC TCCAACCCAG CCTCCAACCC AGCCTCTGAT GGACTAGAGG
1201CTATCGTCAC AGTGACAGAG ACCCTGGAGG AACTGCAGCT GCCTCAGGAA GCCACAGAGA
1261GTGAATCCCG TGGGGCCATC TACTCCATCC CCATCATGGA GGACGGAGGA GGTGGAAGCT
1321CCACTCCAGA AGACCCAGCA GAGGCCCCTA GGACGCTCCT AGAATTTGAA ACACAATCCA
1381TGGTACCGCC CACGGGGTTC TCAGAAGAGG AAGGTAAGGC ATTGGAGGAA GAAGAGAAAT
1441ATGAAGATGA AGAAGAGAAA GAGGAGGAAG AAGAAGAGGA GGAGGTGGAG GATGAGGCTC
1501TGTGGGCATG GCCCAGCGAG CTCAGCAGCC CGGGCCCTGA GGCCTCTCTC CCCACTGAGC
1561CAGCAGCCCA GGAGAAGTCA CTCTCCCAGG CGCCAGCAAG GGCAGTCCTG CAGCCTGGTG
1621CATCACCACT TCCTGATGGA GAGTCAGAAG CTTCCAGGCC TCCAAGGGTC CATGGACCAC
1681CTACTGAGAC TCTGCCCACT CCCAGGGAGA GGAACCTAGC ATCCCCATCA CCTTCCACTC
1741TGGTTGAGGC AAGAGAGGTG GGGGAGGCAA CTGGTGGTCC TGAGCTATCT GGGGTCCCTC
1801GAGGAGAGAG CGAGGAGACA GGAAGCTCCG AGGGTGCCCC TTCCCTGCTT CCAGCCACAC
1861GGGCCCCTGA GGGTACCAGG GAGCTGGAGG CCCCCTCTGA AGATAATTCT GGAAGAACTG
1921CCCCAGCAGG GACCTCAGTG CAGGCCCAGC CAGTGCTGCC CACTGACAGC GCCAGCCGAG
1981GTGGAGTGGC CGTGGTCCCC GCATCAGGTG ACTGTGTCCC CAGCCCCTGC CACAATGGTG
2041GGACATGCTT GGAGGAGGAG GAAGGGGTCC GCTGCCTATG TCTGCCTGGC TATGGGGGGG
2101ACCTGTGCGA TGTTGGCCTC CGCTTCTGCA ACCCCGGCTG GGACGCCTTC CAGGGCGCCT
2161GCTACAAGCA CTTTTCCACA CGAAGGAGCT GGGAGGAGGC AGAGACCCAG TGCCGGATGT
2221ACGGCGCGCA TCTGGCCAGC ATCAGCACAC CCGAGGAACA GGACTTCATC AACAACCGGT
2281ACCGGGAGTA CCAGTGGATC GGACTCAACG ACAGGACCAT CGAAGGCGAC TTCTTGTGGT
2341CGGATGGCGT CCCCCTGCTC TATGAGAACT GGAACCCTGG GCAGCCTGAC AGCTACTTCC
2401TGTCTGGAGA GAACTGCGTG GTCATGGTGT GGCATGATCA GGGACAATGG AGTGACGTGC
2461CCTGCAACTA CCACCTGTCC TACACCTGCA AGATGGGGCT GGTGTCCTGT GGGCCGCCAC
2521CGGAGCTGCC CCTGGCTCAA GTGTTCGGCC GCCCACGGCT GCGCTATGAG GTGGACACTG
2581TGCTTCGCTA CCGGTGCCGG GAAGGACTGG CCCAGCGCAA TCTGCCGCTG ATCCGATGCC
2641AAGAGAACGG TCGTTGGGAG GCCCCCCAGA TCTCCTGTGT GCCCAGAAGA CCTGCCCGAG
2701CTCTGCACCC AGAGGAGGAC CCAGAAGGAC GTCAGGGGAG GCTACTGGGA CGCTGGAAGG
2761CGCTGTTGAT CCCCCCTTCC AGCCCCATGC CAGGTCCCTA CCCAACTTTC TTGTACAAAG
2821Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)