Construct: ORF ccsbBroadEn_08823
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003654.1_s300c1, BRDN0000390923
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FIGNL1 (63979)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001042762.4 | 99.9% | 99.8% | 409G>A |
| 2 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001287492.3 | 99.9% | 99.8% | 409G>A |
| 3 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001287493.2 | 99.9% | 99.8% | 409G>A |
| 4 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001287494.3 | 99.9% | 99.8% | 409G>A |
| 5 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001287495.2 | 99.9% | 99.8% | 409G>A |
| 6 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001346560.2 | 99.9% | 99.8% | 409G>A |
| 7 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001346561.2 | 99.9% | 99.8% | 409G>A |
| 8 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001346562.2 | 99.9% | 99.8% | 409G>A |
| 9 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001346563.2 | 99.9% | 99.8% | 409G>A |
| 10 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001346564.2 | 99.9% | 99.8% | 409G>A |
| 11 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001346565.2 | 99.9% | 99.8% | 409G>A |
| 12 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_022116.6 | 99.9% | 99.8% | 409G>A |
| 13 | human | 63979 | FIGNL1 | fidgetin like 1 | XM_011515470.3 | 99.9% | 99.8% | 409G>A |
| 14 | human | 63979 | FIGNL1 | fidgetin like 1 | XM_017012501.1 | 99.9% | 99.8% | 409G>A |
| 15 | human | 63979 | FIGNL1 | fidgetin like 1 | XM_024446863.1 | 99.9% | 99.8% | 409G>A |
| 16 | human | 63979 | FIGNL1 | fidgetin like 1 | XM_024446864.1 | 99.9% | 99.8% | 409G>A |
| 17 | human | 63979 | FIGNL1 | fidgetin like 1 | XM_024446865.1 | 99.9% | 99.8% | 409G>A |
| 18 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001287496.3 | 83.4% | 83.3% | 0_1ins333;76G>A |
| 19 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001346558.2 | 83.4% | 83.3% | 0_1ins333;76G>A |
| 20 | human | 63979 | FIGNL1 | fidgetin like 1 | NM_001346559.2 | 83.4% | 83.3% | 0_1ins333;76G>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2088
- ORF length:
- 2022
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GACCTCCAGC TCTAGATCTG TGCACCTGAG TGAATGGCAG AAGAATTACT 121 TCGCAATTAC ATCTGGCATA TGTACCGGAC CGAAGGCAGA TGCATACCGT GCACAGATAT 181 TACGCATTCA GTATGCATGG GCAAACTCTG AGATTTCCCA GGTCTGTGCT ACCAAACTGT 241 TCAAAAAATA TGCAGAGAAA TATTCTGCAA TTATTGATTC TGACAATGTT GAATCTGGGT 301 TGAATAATTA TGCAGAAAAC ATTTTAACTT TGGCAGGATC TCAACAAACA GATAGTGACA 361 AGTGGCAGTC TGGATTGTCA ATAAATAATG TTTTCAAAAT GAGTAGTGTA CAGAAGATGA 421 TGCAAGCTGG CAAAAAATTC AAAGACTCTC TGTTGGAACC TGCTCTTGCA TCAATGGTAA 481 TCCATAAGGA GGCCACTGTC TTTGATCTTC CTAAATTTAG TGTTTGTGGT AGTTCTCAAG 541 AGAGTGACTC ATTACCTAAC TCAGCTCATG ATCGAGACCG GACCCAAGAC TTCCCGGAGA 601 GCAATCGTTT GAAACTCCTT CAGAATGCCC AGCCACCTAT GGTGACTAAC ACTGCTAGGA 661 CTTGTCCTAC ATTCTCAGCA CCTGTAGGTG AGTCAGCTAC TGCAAAATTC CATGTCACAC 721 CATTGTTTGG AAATGTCAAA AAGGAAAATC ACAGCTCTGC AAAAGAAAAC ATAGGACTTA 781 ATGTGTTCTT ATCTAACCAG TCTTGTTTTC CTGCTGCCTG TGAAAATCCA CAGAGGAAGT 841 CTTTTTATGG TTCTGGCACC ATTGATGCAC TTTCCAATCC AATACTGAAT AAGGCTTGTA 901 GTAAAACAGA AGATAATGGC CCAAAGGAGG ATAGCAGCCT GCCTACATTT AAAACTGCAA 961 AAGAACAATT ATGGGTAGAT CAGCAAAAAA AGTACCACCA ACCTCAGCGT GCATCAGGGT 1021 CTTCATATGG TGGTGTAAAA AAGTCTCTAG GAGCTAGTAG ATCCCGAGGG ATACTTGGAA 1081 AGTTTGTTCC TCCTATACCC AAGCAAGATG GGGGAGAGCA GAATGGAGGA ATGCAATGTA 1141 AGCCTTATGG GGCAGGACCT ACAGAACCAG CACATCCAGT TGATGAGCGT CTGAAGAACT 1201 TGGAGCCAAA GATGATTGAA CTTATTATGA ATGAGATTAT GGATCATGGA CCTCCAGTAA 1261 ATTGGGAAGA TATTGCAGGA GTAGAATTTG CTAAAGCCAC CATAAAGGAA ATAGTTGTGT 1321 GGCCCATGTT GAGGCCAGAC ATCTTTACTG GTTTAAGGGG ACCCCCTAAA GGAATTTTGC 1381 TCTTTGGTCC TCCTGGGACT GGTAAAACTC TAATTGGCAA GTGCATTGCT AGTCAGTCTG 1441 GGGCAACATT CTTTAGCATC TCTGCTTCAT CCTTAACTTC TAAATGGGTA GGTGAGGGGG 1501 AGAAAATGGT CCGTGCATTG TTTGCTGTTG CAAGGTGTCA GCAACCAGCT GTGATATTTA 1561 TTGACGAAAT TGATTCCTTG TTATCTCAAC GGGGAGATGG TGAGCATGAA TCTTCTAGAA 1621 GGATAAAAAC AGAATTTTTA GTTCAATTAG ATGGAGCAAC AACATCTTCT GAAGATCGTA 1681 TCCTAGTGGT GGGAGCAACA AATCGGCCAC AAGAAATTGA TGAGGCTGCC CGGAGAAGAT 1741 TGGTGAAAAG GCTTTATATT CCCCTCCCAG AAGCTTCAGC CAGGAAACAG ATAGTAATTA 1801 ATCTAATGTC CAAAGAGCAG TGTTGCCTCA GTGAAGAAGA AATTGAACAG ATTGTACAGC 1861 AGTCTGATGC GTTTTCAGGA GCAGACATGA CACAGCTTTG CAGGGAGGCT TCTCTTGGTC 1921 CTATTCGCAG TTTACAAACT GCTGACATTG CTACCATAAC ACCGGATCAA GTTCGACCCA 1981 TAGCTTACAT TGATTTTGAA AATGCTTTTA GAACTGTGCG ACCTAGTGTT TCTCCAAAAG 2041 ATTTAGAGCT TTATGAAAAC TGGAACAAAA CTTTTGGTTG TGGAAAGTAC CCAACTTTCT 2101 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac