Construct: ORF ccsbBroadEn_08872
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009875.1_s300c1, BRDN0000457376
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EFCAB6 (64800)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | NM_198856.3 | 99.8% | 99.7% | (many diffs) |
| 2 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530321.3 | 93.8% | 93.7% | (many diffs) |
| 3 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_024452262.1 | 93.8% | 93.7% | (many diffs) |
| 4 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_017028912.2 | 93.1% | 92.4% | (many diffs) |
| 5 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530323.2 | 93% | 92.5% | (many diffs) |
| 6 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_005261705.4 | 90.9% | 90.8% | (many diffs) |
| 7 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530319.3 | 90.9% | 90.8% | (many diffs) |
| 8 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | NM_022785.4 | 89.7% | 89.6% | (many diffs) |
| 9 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_017028911.2 | 88.2% | 88% | (many diffs) |
| 10 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530325.2 | 87.2% | 87% | (many diffs) |
| 11 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530318.3 | 85.6% | 85.1% | (many diffs) |
| 12 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530320.3 | 85% | 81.4% | (many diffs) |
| 13 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_005261704.2 | 84.8% | 84.7% | (many diffs) |
| 14 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530317.3 | 84.8% | 84.7% | (many diffs) |
| 15 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530316.1 | 83.5% | 83.3% | (many diffs) |
| 16 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_017028910.2 | 83.5% | 83.3% | (many diffs) |
| 17 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530327.2 | 81.9% | 80.6% | (many diffs) |
| 18 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530326.3 | 71.4% | 70.4% | (many diffs) |
| 19 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XR_937896.3 | 69.6% | (many diffs) | |
| 20 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XR_937895.3 | 65.8% | (many diffs) | |
| 21 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_024452263.1 | 55.5% | 55.4% | (many diffs) |
| 22 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530328.3 | 52.8% | 52.8% | (many diffs) |
| 23 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XM_011530330.3 | 43.9% | 43.8% | (many diffs) |
| 24 | human | 64800 | EFCAB6 | EF-hand calcium binding dom... | XR_001755274.2 | 38.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 4116
- ORF length:
- 4047
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAATTGCTGC CGCACATTAA GAGAACTTGA AATCCAAGTG GGAGAAAAGG 121 TTTTCAAAAA CATTAAGACT GTTATGAAAG CCTTTGAGCT CATTGATGTT AACAAGACTG 181 GACTGGTTCG ACCGCAGGAG CTAAGAAGGG TTCTGGAGAC CTTCTGTATG AAGTTAAGAG 241 ACGAGGAATA CGAAAAGTTT TCGAAACACT ACAACATCCA CAAGGATACT GCAGTAGATT 301 ACAACGTGTT TTTGAAGAAT CTCAGCATAA ATAACGACTT GAACCTTAGA TATTGTATGG 361 GAAATCAAGA GGTCTCATTG GAGAATCAAC AAGCCAAAAA TTCCAAAAAG GAACGTTTGC 421 TAGGTTCTGC ATCATCTGAA GATATCTGGA GAAACTACTC CTTGGATGAA ATTGAGAGGA 481 ACTTTTGTCT ACAACTTTCG AAGTCTTATG AAAAGGTTGA AAAGGCCCTC AGTGCAGGGG 541 ACCCCTGTAA AGGTGGCTAC GTGTCTTTTA ATTATCTAAA GATTGTCCTC GACACTTTTG 601 TATACCAAAT ACCAAGAAGA ATTTTTATCC AGTTAATGAA AAGATTTGGA CTTAAAGCCA 661 CCACTAAAAT CAATTGGAAG CAATTTCTAA CATCATTTCA TGAGCCTCAG GGGTTGCAAG 721 TTAGCAGTAA AGGTCCCCTG ACAAAAAGAA ATAGCATCAA CTCTAGAAAT GAATCTCACA 781 AGGAAAACAT CATCACAAAG TTATTTAGAC ACACTGAAGA TCACTCTGCG TCACTGAAGA 841 AAGCATTACT GATAATCAAC ACTAAACCCG ATGGACCGAT AACAAGAGAA GAATTTCGAT 901 ATATTCTAAA TTGCATGGCT GTAAAACTAA GCGATTCAGA ATTCAAAGAA CTAATGCAAA 961 TGCTTGACCC TGGGGACACT GGAGTGGTCA ACACCAGCAT GTTTATTGAT CTGATTGAAG 1021 AGAACTGTAG GATGAGAAAG ACATCTCCCT GTACAGATGC TAAGACACCT TTCCTCCTGG 1081 CCTGGGATTC AGTGGAAGAA ATTGTTCATG ATACAATTAC TAGGAACCTA CAAGCTTTTT 1141 ATAACATGCT ACGCTCATAT GACCTTGGAG ACACAGGGCG CATTGGCCGA AATAATTTCA 1201 AGAAAATCAT GCACGTCTTC TGTCCATTTT TAACGAATGC ACATTTCATA AAACTCTGCA 1261 GTAAGATTCA GGACATTGGT TCAGGAAGAA TCCTTTACAA GAAACTTTTG GCATGCATAG 1321 GAATTGATGG CCCACCCACT GTCTCTCCAG TTCTTGTTCC AAAGGATCAG CTGTTAAGTG 1381 AACATTTACA AAAAGATGAA CAGCAGCAGC CAGATCTTTC TGAGAGAACC AAGCTCACGG 1441 AGGATAAAAC CACCCTGACC AAGAAGATGA CCACAGAAGA AGTGATTGAA AAATTCAAAA 1501 AGTGTATACA GCAGCAGGAC CCGGCATTCA AAAAACGATT TCTTGACTTC AGCAAGGAGC 1561 CTAATGGAAA AATTAACGTG CATGACTTTA AGAAGGTACT GGAAGACACT GGGATGCCCA 1621 TGGACGATGA TCAGTATGCC CTGCTGACCA CTAAAATAGG CTTCGAGAAG GAAGGGATGA 1681 GCTATCTTGA TTTTGCAGCA GGATTTGAAG ATCCTCCAAT GAGAGGGCCG GAAACCACTC 1741 CGCCGCAGCC TCCAACTCCT TCAAAAAGTT ACGTGAACAG CCACTTTATC ACCGCAGAAG 1801 AATGCCTGAA GCTTTTCCCT AGGAGGCTGA AGGAGTCATT CCGGGACCCC TACTCTGCCT 1861 TCTTTAAAAC AGATGCTGAC AGGGATGGCA TAATCAACAT GCATGACCTT CACAGACTGC 1921 TCCTGCATCT ACTGCTTAAT CTCAAAGACG ACGAGTTTGA GCGCTTCCTT GGCCTTCTTG 1981 GCTTGAGACT TAGTGTCACT TTAAATTTTC GGGAATTTCA AAATTTGTGT GAGAAGAGAC 2041 CATGGAGAAC AGATGAAGCG CCTCAAAGAC TCATTAGACC AAAACAGAAG GTTGCGGATT 2101 CAGAACTAGC TTGTGAGCAG GCTCATCAGT ATCTTGTTAC CAAAGCAAAA AACAGATGGT 2161 CAGACTTGTC TAAGAATTTT CTAGAAACCG ATAATGAGGG CAATGGCATT CTTCGACGCC 2221 GGGACATAAA GAACGCACTG TACGGTTTTG ATATTCCCCT CACACCAAGA GAGTTTGAAA 2281 AGCTTTGGGC AAGATACGAC ACCGAGGGAA AAGGGCACAT TACTTACCAG GAATTTTTAC 2341 AGAAATTGGG TATTAACTAT TCGCCTGCTG TCCATCGGCC CTGTGCAGAG GATTATTTCA 2401 ACTTCATGGG TCATTTTACA AAGCCACAGC AGCTACAGGA AGAGATGAAG GAGCTGCAGC 2461 AGAGCACAGA GAAGGCTGTG GCAGCCAGGG ATAAGCTTAT GGACCGCCAT CAAGATATCA 2521 GCAAAGCATT CACCAAAACT GATCAATCCA AAACCAACTA CATATCCATA TGCAAGATGC 2581 AGGAAGTGCT GGAAGAATGT GGATGTTCTC TTACCGAAGG GGAGCTGACC CATCTGCTAA 2641 ACAGTTGGGG AGTCAGCCGG CATGATAATG CTATCAATTA CCTCGACTTC CTGAGAGCAG 2701 TGGAGAACAG CAAGTCAACA GGAGCTCAGC CCAAGGAAAA AGAAGAGAGC ATGCCAATCA 2761 ATTTTGCAAC GCTGAATCCA CAGGAGGTTG TGAGGAAGAT CCAGGAAGTA GTTGAGTCCT 2821 CCCAGCTGGC TTTGTCCACG GCATTTTCTG CATTGGGTAA AGAGGATACA GGATTTGTAA 2881 AGGCTACAGA ATTCGGACAA GTTCTTAAGG ATTTCTGTTA CAAACTAACG GACAATCAGT 2941 ATCATTATTT TTTGAGGAAA CTAAGAACTC ATCTAACCCC CTATATAAAT TGGAAATATT 3001 TTCTCCAGAA CTTTAGCTGT TTCCTTGAGG AGACAGCTGA TGAGTGGGCT GAGAAAATGC 3061 CCAAAGGCCC GCCGCCTACC TCTCCCAAGG CCACAGCCGA CAGAGACATC CTGGCTCGCC 3121 TCCACAAAGC AGTGACTTCC CATTACCATG CCATCACCCA GGAGTTTGAG AATTTTGACA 3181 CCATGAAAAC GAACACCATC TCCAGAGAGG AGTTTAGGGC CATTTGTAAT CGCCGCGTCC 3241 AAATCCTGAC GGACGAACAG TTTGGCAGAC TCTGGAACGA GATGCCAGTC AATGCCAAGG 3301 GGAGGCTGAA ATACCCGGAC TTCCTGAGCA GGTTCAGTTC CGAGACAGCA GCCACACCAA 3361 TGGCCACTGG TGACTCGGCC GTGGCCCAGA GAGGGAGCAG TGTCCCTGAC GTCTCGGAAG 3421 GCACCAGATC TGCCCTCTCA TTGCCCACTC AGGAGCTGAG ACCAGGGTCA AAGTCGCAGA 3481 GCCACCCCTG TACTCCAGCG AGCACCACCG TGATCCCGGG CACTCCACCC TTGCAGAACT 3541 GTGATCCCAT AGAGAGCAGG CTCCGGAAGA GAATCCAGGG CTGCTGGCGC CAGCTCCTGA 3601 AAGAATGCAA GGAGAAGGAC GTGGCCAGAC AGGGGGACAT CAACGCCTCC GATTTCCTGG 3661 CTCTTGTGGA GAAATTCAAC CTGGACATAA GCAAAGAGGA GTGTCAGCAG CTCATTATAA 3721 AATACGACTT AAAGAGCAAC GGGAAATTTG CATACTGTGA CTTCATTCAG AGCTGTGTCC 3781 TCCTGCTAAA AGCAAAGGAA AGCTCACTGA TGCACAGGAT GAAGATCCAG AATGCACACA 3841 AGATGAAAGA AGCCGGCGCG GAGACGCCAT CTTTTTACTC TGCTCTGCTG CGTATTCAGC 3901 CCAAAATTGT GCACTGCTGG AGGCCAATGC GGCGCACGTT CAAAAGCTAT GATGAGGCTG 3961 GAACAGGGCT GCTAAGCGTC GCAGATTTCA GGACGGTCCT GAGACAGTAC AGCATCAACC 4021 TCTCTGAGGA AGAGTTCTTC CATATTCTGG AGTATTACGA TAAGACGCTG TCTTCAAAAA 4081 TCTCCTACAA CGACTTCCTC CGGGCATTCC TCCAGTTGCC AACTTTCTTG TACAAAGTTG 4141 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac