Construct: ORF ccsbBroadEn_08969
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009259.1_s300c1, BRDN0000395284
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TM4SF20 (79853)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79853 | TM4SF20 | transmembrane 4 L six famil... | NM_024795.4 | 99.7% | 99.1% | 80C>T;265C>T |
| 2 | human | 79853 | TM4SF20 | transmembrane 4 L six famil... | XM_011511876.2 | 70.5% | 70.3% | 0_1ins201;64C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 756
- ORF length:
- 687
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCTGCTGC GAAGGATGGA CATCCTGCAA TGGATTCAGC CTGCTGGTTC 121 TACTGCTGTT AGGAGTAGTT CTCAATGTGA TACCTCTAAT TGTCAGCTTA GTTGAGGAAG 181 ACCAATTTTC TCAAAACCCC ATCTCTTGCT TTGAGTGGTG GTTCCCAGGA ATTATAGGAG 241 CAGGTCTGAT GGCCATTCCA GCAACAACAA TGTCCTTGAC AGCAAGAAAA AGAGCGTGCT 301 GCAACAACAG AACTGGAATG TTTCTTTCAT CATTTTTCAG TGTGATCACA GTCATTGGTG 361 CTCTGTATTG CATGCTGATA TCCATCCAGG CTCTCTTAAA AGGTCCTCTC ATGTGTAATT 421 CTCCAAGCAA CAGTAATGCC AATTGTGAAT TTTCATTGAA AAACATCAGT GACATTCATC 481 CAGAATCCTT CAACTTGCAG TGGTTTTTCA ATGACTCTTG TGCACCTCCT ACTGGTTTCA 541 ATAAACCCAC CAGTAACGAC ACCATGGCGA GTGGCTGGAG AGCATCTAGT TTCCACTTCG 601 ATTCTGAAGA AAACAAACAT AGGCTTATCC ACTTCTCAGT ATTTTTAGGT CTATTGCTTG 661 TTGGAATTCT GGAGGTCCTG TTTGGGCTCA GTCAGATAGT CATCGGTTTC CTTGGCTGTC 721 TGTGTGGAGT CTCTAAGCGA AGAAGTCAAA TTGTGTTGCC AACTTTCTTG TACAAAGTtg 781 gcattataag aaagcattgc ttatcaattt gttgcaacga ac