Construct: ORF ccsbBroadEn_08975

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001707.1_s300c1, BRDN0000392798
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CPSF7 (79869)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79869 CPSF7 cleavage and polyadenylatio... NM_001136040.3 99.9% 100% 1209C>T
2 human 79869 CPSF7 cleavage and polyadenylatio... XM_005274299.4 99.9% 100% 1209C>T
3 human 79869 CPSF7 cleavage and polyadenylatio... XM_011545258.2 99.9% 100% 1209C>T
4 human 79869 CPSF7 cleavage and polyadenylatio... NM_001142565.2 98% 98% 523_524ins27;1182C>T
5 human 79869 CPSF7 cleavage and polyadenylatio... XM_011545259.2 98% 98% 523_524ins27;1182C>T
6 human 79869 CPSF7 cleavage and polyadenylatio... NM_024811.3 91.5% 91.6% 1_129del;1338C>T
7 human 79869 CPSF7 cleavage and polyadenylatio... XM_005274298.4 89.8% 89.8% 1_129del;652_653ins27;1311C>T
8 human 79869 CPSF7 cleavage and polyadenylatio... XM_005274303.4 80.6% 80.6% 1_2delATins272;939C>T
9 human 79869 CPSF7 cleavage and polyadenylatio... XM_011545260.2 80.6% 80.6% 1_2delATins272;939C>T
10 human 79869 CPSF7 cleavage and polyadenylatio... XM_011545261.2 80.6% 80.6% 1_2delATins272;939C>T
11 human 79869 CPSF7 cleavage and polyadenylatio... XM_011545257.2 78.5% 78.5% 1_129del;834_835ins201;1137C>T
12 human 79869 CPSF7 cleavage and polyadenylatio... XM_017018345.1 76.7% 76.8% (many diffs)
13 human 79869 CPSF7 cleavage and polyadenylatio... XM_011545262.3 50.2% 50.3% 0_1ins702;507C>T
14 human 79869 CPSF7 cleavage and polyadenylatio... XM_011545263.2 50.2% 50.3% 0_1ins702;507C>T
15 mouse 269061 Cpsf7 cleavage and polyadenylatio... NM_172302.3 93.4% 98.7% (many diffs)
16 mouse 269061 Cpsf7 cleavage and polyadenylatio... XM_006527116.3 93.4% 98.7% (many diffs)
17 mouse 269061 Cpsf7 cleavage and polyadenylatio... NM_001164272.1 91.6% 96.8% (many diffs)
18 mouse 269061 Cpsf7 cleavage and polyadenylatio... XM_006527117.2 78.8% 79.5% (many diffs)
19 mouse 269061 Cpsf7 cleavage and polyadenylatio... XM_006527119.1 78.8% 79.5% (many diffs)
20 mouse 269061 Cpsf7 cleavage and polyadenylatio... XM_017318214.1 78.8% 79.5% (many diffs)
21 mouse 269061 Cpsf7 cleavage and polyadenylatio... XM_006527120.2 77% 77.6% (many diffs)
22 mouse 269061 Cpsf7 cleavage and polyadenylatio... XM_017318215.1 77% 77.6% (many diffs)
23 mouse 269061 Cpsf7 cleavage and polyadenylatio... XM_006527123.2 47.4% 49.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1479
ORF length:
1413
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC AGAAGGAGTG GACTTGATTG ATATATATGC TGACGAGGAG TTCAACCAGG
121ACCCAGAGTT CAACAATACA GATCAGATTG ACCTGTATGA TGATGTGCTG ACAGCCACCT
181CACAGCCCTC AGATGACAGA AGCAGCAGCA CTGAACCACC TCCTCCTGTT CGCCAGGAGC
241CATCTCCCAA GCCCAACAAC AAGACCCCTG CAATTCTGTA TACCTACAGT GGCCTGCGTA
301ATAGACGAGC TGCCGTTTAT GTGGGCAGCT TCTCCTGGTG GACCACAGAC CAGCAGCTGA
361TCCAGGTTAT TCGCTCTATA GGAGTCTATG ATGTGGTGGA GTTGAAATTT GCAGAGAATC
421GAGCAAATGG CCAGTCCAAA GGGTATGCTG AGGTGGTGGT AGCCTCTGAA AACTCTGTCC
481ACAAATTGTT GGAACTCCTA CCAGGGAAAG TTCTTAATGG AGAAAAAGTG GACGTGAGGC
541CGGCCACCCG GCAGAACCTG TCACAGTTTG AGGCACAGGC TCGGAAACGT GAGTGTGTCC
601GAGTCCCAAG AGGGGGAATA CCTCCACGGG CCCATTCCCG AGATTCTAGT GATTCTGCTG
661ATGGACGGGC CACACCCTCT GAGAACCTTG TACCCTCATC TGCTCGTGTG GATAAGCCCC
721CCAGTGTGCT GCCCTACTTC AATCGTCCTC CTTCGGCCCT TCCCCTGATG GGTCTGCCCC
781CACCACCAAT TCCACCCCCA CCACCTCTCT CCTCAAGCTT TGGGGTCCCT CCTCCTCCTC
841CTGGTATCCA CTACCAGCAT CTCATGCCCC CACCTCCTCG ATTACCTCCT CATCTTGCTG
901TACCTCCCCC TGGGGCCATC CCACCTGCCC TTCACCTCAA TCCAGCCTTC TTCCCCCCAC
961CAAACGCTAC AGTGGGGCCT CCACCAGATA CTTACATGAA GGCCTCTGCC CCCTATAACC
1021ACCATGGCAG CCGAGATTCG GGCCCTCCAC CCTCTACAGT GAGTGAAGCC GAATTTGAAG
1081ATATCATGAA GCGAAACAGA GCAATTTCCA GCAGTGCCAT TTCCAAAGCA GTATCTGGAG
1141CCAGTGCAGG GGATTACAGT GACGCAATTG AGACGCTGCT CACAGCCATT GCGGTTATCA
1201AACAGTCCCG GGTTGCCAAT GATGAGCGTT GCCGTGTCCT CATCTCCTCT CTTAAGGACT
1261GTCTTCATGG CATTGAAGCC AAGTCCTACA GTGTGGGTGC CAGTGGGAGC TCTTCCAGGA
1321AAAGACATCG CTCCCGGGAA AGGTCACCTA GCCGGTCCCG GGAGAGCAGC AGGAGGCACC
1381GGGATCTGCT TCATAATGAA GATCGGCATG ATGATTATTT CCAAGAAAGG AACCGGGAGC
1441ATGAGAGACA CCGGGATAGA GAACGGGACC GGCACCACTG CCCAACTTTC TTGTACAAAG
1501Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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