Construct: ORF ccsbBroadEn_09033
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000230.1_s300c1, BRDN0000398246
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- TRAF3IP3 (80342)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | NM_001320143.1 | 99.9% | 99.8% | 1117C>G |
| 2 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | NM_025228.4 | 99.9% | 99.8% | 1117C>G |
| 3 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | NM_001320144.2 | 96.3% | 96.1% | 282_283ins60;1057C>G |
| 4 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_017002399.2 | 96.3% | 96.1% | 1117C>G;1251_1252ins60 |
| 5 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_017002400.2 | 76% | 67.4% | (many diffs) |
| 6 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_011510018.3 | 75.6% | 75.2% | (many diffs) |
| 7 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XR_001737440.2 | 70.4% | (many diffs) | |
| 8 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XR_247044.3 | 67.6% | (many diffs) | |
| 9 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | NR_109871.2 | 62.7% | (many diffs) | |
| 10 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XR_001737439.2 | 60.6% | (many diffs) | |
| 11 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_011510019.2 | 55.7% | 55.5% | (many diffs) |
| 12 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_005273279.5 | 52% | 51.9% | 0_1ins792;325C>G |
| 13 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_005273280.2 | 52% | 51.9% | 0_1ins792;325C>G |
| 14 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_024449954.1 | 48.3% | 48.2% | 0_1ins792;325C>G;459_460ins60 |
| 15 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XR_001737438.2 | 42.9% | (many diffs) | |
| 16 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | NM_001287754.2 | 32.4% | 31.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1722
- ORF length:
- 1653
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATCAGCCCA GACCCCAGGC CCTCCCCTGG CTTGGCCCGG TGGGCTGAGA 121 GCTATGAGGC CAAGTGTGAG CGCAGGCAAG AGATCCGTGA AAGCCGCCGC TGCCGTCCCA 181 ATGTGACCAC TTGCCGCCAG GTGGGGAAGA CGCTGAGGAT CCAACAGAGA GAGCAGCTCC 241 AGAGAGCTCG ACTGCAGCAG TTCTTCAGGA GGAGGAACCT GGAGCTAGAG GAGAAGGGCA 301 AAGCGCAGCA TCCCCAGGCC AGGGAGCAAG GGCCCTCCAG GCGGCCAGGA CAGGTGACTG 361 TCCTCAAGGA ACCCTTGTCT TGTGCCAGAA GGATTTCTTC TCCCAGAGAG CAGGTGACAG 421 GCACCAGCTC TGAAGTCTTT CCAGCCCAGC ATCCTCCTCC CTCAGGCATC TGCAGGGATC 481 TGTCTGACCA CCTCTCCTCA CAGGCTGGGG GCCTTCCTCC ACAGGACACT CCCATCAAGA 541 AGCCACCCAA ACACCACCGT GGTACTCAGA CAAAGGCAGA AGGACCAACA ATTAAGAACG 601 ATGCCAGTCA GCAAACCAAT TACGGAGTTG CAGTTCTGGA TAAGGAAATC ATCCAGCTTT 661 CTGATTACCT CAAAGAGGCC CTACAAAGGG AGCTGGTCCT AAAACAGAAA ATGGTGATTC 721 TCCAAGACCT ACTGTCCACT CTGATTCAGG CCTCTGACAG CTCTTGGAAG GGACAGCTTA 781 ATGAAGACAA ACTGAAGGGG AAACTGAGAT CCTTAGAAAA CCAGCTATAC ACCTGTACCC 841 AGAAATACTC CCCTTGGGGA ATGAAAAAAG TACTACTGGA GATGGAAGAC CAGAAAAACA 901 GCTATGAGCA GAAGGCCAAG GAGTCACTGC AGAAAGTGCT GGAGGAGAAA ATGAATGCAG 961 AGCAGCAACT ACAGAGCACA CAGCGATCCC TGGCCCTGGC AGAGCAGAAG TGTGAAGAGT 1021 GGAGGAGCCA GTATGAGGCT CTGAAGGAGG ACTGGAGGAC CCTTGGGACC CAGCACAGGG 1081 AGCTGGAGAG CCAACTCCAC GTGCTTCAGT CCAAACTGCA GGGAGCAGAT AGCAGGGACT 1141 TACAGATGAA CCAGGCCCTG CGATTTTTGG AAAATGAGCA CCAGGAACTG CAGGCCAAGA 1201 TTGAATGCCT GCAAGGGGAC AGAGACCTGT GCAGCTTGGA TACCCAGGAC CTACAAGATC 1261 AACTAAAAAG GTCAGAGGCA GAGAAACTCA CCCTGGTGAC CAGAGTACAG CAGTTGCAGG 1321 GTTTGCTTCA AAATCAATCC TTACAGCTTC AAGAACAGGA GAAACTCTTA ACAAAGAAAG 1381 ATCAGGCTTT GCCCGTGTGG AGTCCAAAGT CCTTCCCTAA CGAAGTGGAG CCTGAGGGTA 1441 CAGGGAAGGA GAAAGACTGG GATCTCAGAG ACCAGCTGCA AAAGAAGACT TTGCAGCTCC 1501 AGGCCAAGGA AAAGGAGTGC AGAGAACTGC ATTCAGAATT AGACAACCTC AGTGACGAGT 1561 ATCTCTCCTG CCTGCGTAAG CTGCAGCACT GTCGAGAAGA GCTGAACCAG AGCCAGCAGC 1621 TGCCTCCCAG AAGGCAATGT GGGCGATGGC TCCCAGTGCT GATGGTGGTG ATTGCTGCAG 1681 CACTGGCAGT GTTCCTGGCC AATAAAGACA ACCTGATGAT CTAGCCAACT TTCTTGTACA 1741 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac