Construct: ORF ccsbBroadEn_09034

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001925.1_s300c1, BRDN0000456601
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DCAF11 (80344)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80344 DCAF11 DDB1 and CUL4 associated fa... NM_001163484.1 99.8% 99.8% 620G>A;648C>T
2 human 80344 DCAF11 DDB1 and CUL4 associated fa... NM_025230.4 99.8% 99.8% 620G>A;648C>T
3 human 80344 DCAF11 DDB1 and CUL4 associated fa... NM_181357.2 95.1% 95% 129_130ins78;542G>A;570C>T
4 human 80344 DCAF11 DDB1 and CUL4 associated fa... NR_028100.1 40.6% (many diffs)
5 human 80344 DCAF11 DDB1 and CUL4 associated fa... NR_028099.1 35.9% (many diffs)
6 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... NM_001199009.1 89.2% 93.4% (many diffs)
7 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... NM_133734.3 89.2% 93.4% (many diffs)
8 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519081.3 89.2% 93.4% (many diffs)
9 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519083.3 89.2% 93.4% (many diffs)
10 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519084.3 89.2% 93.4% (many diffs)
11 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519085.3 89.2% 93.4% (many diffs)
12 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519086.3 89.2% 93.4% (many diffs)
13 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519087.3 81.8% 84.8% (many diffs)
14 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519088.3 81.8% 84.8% (many diffs)
15 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519089.2 81.8% 84.8% (many diffs)
16 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519090.3 81.8% 84.8% (many diffs)
17 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519091.3 81.8% 84.8% (many diffs)
18 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... NR_037572.1 54.6% (many diffs)
19 mouse 28199 Dcaf11 DDB1 and CUL4 associated fa... XM_006519092.3 49.2% 50% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1707
ORF length:
1638
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGATCGCGG AACAGCAGCA GTGCAGGATC CGGGTCCGGA GACCCCTCCG
121AGGGCTTGCC CCGAAGAGGG GCTGGCCTGC GTCGGAGTGA GGAAGAGGAA GAAGAGGATG
181AAGATGTGGA TCTGGCCCAG GTACTGGCCT ATCTCCTCCG CAGAGGCCAA GTGAGGTTGG
241TGCAGGGAGG AGGTGCAGCA AATTTACAAT TCATTCAGGC CCTCTTGGAC TCAGAGGAAG
301AGAATGACAG AGCTTGGGAT GGTCGTCTTG GGGATCGATA CAACCCACCT GTGGATGCTA
361CCCCTGACAC CCGGGAGCTG GAATTCAATG AGATCAAGAC ACAAGTGGAA CTGGCCACAG
421GGCAGCTGGG GCTTAGGCGG GCCGCCCAGA AGCACAGCTT TCCTCGAATG TTGCACCAGA
481GAGAACGGGG CCTCTGCCAT CGGGGAAGCT TCTCCCTTGG AGAACAGTCT CGAGTGATAT
541CTCACTTCTT GCCCAATGAT CTGGGCTTCA CTGATAGCTA CTCTCAGAAG GCTTTCTGTG
601GCATCTACAG CAAAGATGGT CAAATATTCA TGTCTGCTTG CCAAGACCAG ACAATCCGAC
661TCTATGACTG CCGATATGGC CGTTTCCATA AATTCAAGAG CATCAAGGCC CGCGATGTAG
721GCTGGAGCGT CTTGGATGTG GCCTTCACCC CTGATGGGAA CCACTTCCTC TACTCTAGCT
781GGTCTGATTA CATTCATATC TGCAATATCT ATGGTGAGGG AGATACACAC ACTGCCCTGG
841ATCTCAGGCC AGATGAGCGT CGCTTTGCTG TCTTCTCCAT TGCTGTCTCC TCAGATGGAC
901GAGAAGTACT AGGAGGGGCC AATGATGGCT GCCTGTATGT CTTTGACCGA GAACAGAACC
961GGCGCACCCT TCAGATTGAG TCCCATGAGG ATGATGTGAA TGCAGTGGCC TTTGCTGATA
1021TAAGCTCCCA AATCCTGTTC TCTGGGGGAG ATGATGCCAT CTGCAAAGTG TGGGATCGAC
1081GCACCATGCG GGAGGATGAC CCCAAGCCTG TGGGTGCACT GGCTGGACAC CAGGATGGCA
1141TCACCTTCAT TGACAGCAAG GGTGATGCCC GGTATCTGAT CTCCAACTCT AAAGACCAGA
1201CCATCAAACT CTGGGATATC CGACGCTTTT CCAGCCGGGA AGGCATGGAA GCTTCACGCC
1261AGGCTGCCAC ACAGCAAAAC TGGGACTATC GGTGGCAGCA AGTGCCCAAA AAAGCCTGGC
1321GGAAGCTGAA GCTCCCAGGG GACAGCTCCT TGATGACCTA CCGGGGCCAC GGAGTGCTGC
1381ACACCCTCAT CCGCTGCCGG TTCTCCCCCA TTCATAGCAC TGGCCAGCAG TTCATCTACA
1441GTGGCTGCTC CACTGGCAAA GTGGTTGTGT ACGACCTTCT AAGTGGCCAC ATTGTGAAGA
1501AGCTGACCAA CCACAAGGCC TGTGTGCGTG ACGTCAGTTG GCACCCCTTT GAAGAGAAGA
1561TTGTCAGCAG TTCGTGGGAC GGGAACCTGC GTCTGTGGCA GTACCGCCAG GCTGAGTACT
1621TCCAGGATGA CATGCCAGAA TCTGAGGAAT GTGCCAGCGC CCCTGCCCCA GTGCCCCAAT
1681CCTCTACACC CTTTTCCTCA CCCCAGTTGC CAACTTTCTT GTACAAAGTT GGcattataa
1741gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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