Construct: ORF ccsbBroadEn_09036

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003053.1_s300c1, BRDN0000385757
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR61 (80349)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80349 WDR61 WD repeat domain 61 NM_001303247.2 100% 100%
2 human 80349 WDR61 WD repeat domain 61 NM_025234.3 100% 100%
3 human 80349 WDR61 WD repeat domain 61 XM_011522094.2 100% 100%
4 human 80349 WDR61 WD repeat domain 61 XM_017022637.2 86.9% 79.9% (many diffs)
5 human 80349 WDR61 WD repeat domain 61 NM_001303248.2 69.5% 69.5% 39_40ins279
6 human 80349 WDR61 WD repeat domain 61 XR_001751403.2 54.5% 1_176del;924_1308del;1477_1678del
7 human 80349 WDR61 WD repeat domain 61 XR_931918.2 54.3% 1_181del;929_1313del;1482_1683del
8 mouse 66317 Wdr61 WD repeat domain 61 NM_001025375.2 92.8% 97.3% (many diffs)
9 mouse 66317 Wdr61 WD repeat domain 61 NM_023191.3 92.8% 97.3% (many diffs)
10 mouse 66317 Wdr61 WD repeat domain 61 NM_001025376.2 63.1% 66.5% (many diffs)
11 mouse 66317 Wdr61 WD repeat domain 61 XM_011242785.2 63.1% 66.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
981
ORF length:
915
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CAACCAGTAC GGTATTCTCT TCAAACAAGA GCAAGCCCAT GATGATGCCA
121TTTGGTCAGT TGCTTGGGGG ACAAACAAGA AGGAAAACTC TGAGACAGTG GTCACAGGCT
181CCCTAGATGA CCTGGTGAAG GTCTGGAAAT GGCGTGATGA GAGGCTGGAC CTACAGTGGA
241GTCTGGAGGG ACATCAGCTG GGAGTGGTGT CTGTGGACAT CAGCCACACC CTGCCCATTG
301CTGCATCCAG CTCTCTTGAT GCTCATATTC GTCTTTGGGA CTTGGAAAAT GGCAAACAGA
361TAAAGTCCAT AGATGCAGGA CCTGTGGATG CCTGGACTTT GGCCTTTTCT CCTGATTCCC
421AGTATCTGGC CACAGGAACT CATGTCGGGA AAGTGAACAT TTTTGGTGTG GAAAGTGGGA
481AAAAGGAATA TTCTTTGGAC ACGAGAGGAA AATTCATTCT TAGTATTGCA TATAGTCCTG
541ATGGGAAATA CCTAGCCAGT GGAGCCATAG ATGGAATCAT CAATATTTTT GATATTGCAA
601CTGGAAAACT TCTGCATACC CTGGAAGGCC ATGCCATGCC CATTCGCTCC TTGACCTTTT
661CCCCGGACTC CCAGCTCCTT GTCACTGCTT CAGATGATGG CTACATCAAG ATCTATGATG
721TACAACATGC CAATTTGGCT GGCACGCTGA GCGGCCATGC CTCCTGGGTG CTGAACGTTG
781CATTCTGTCC TGATGACACT CACTTTGTTT CCAGTTCGTC TGACAAAAGT GTAAAAGTTT
841GGGATGTTGG AACGAGGACT TGTGTTCACA CCTTCTTTGA TCACCAGGAT CAGGTCTGGG
901GAGTAAAATA CAATGGAAAT GGTTCAAAAA TTGTGTCTGT TGGAGATGAC CAGGAAATTC
961ACATCTATGA TTGTCCAATT TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1021attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)