Construct: ORF ccsbBroadEn_09118

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013792.1_s300c1, BRDN0000389873
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SETDB2 (83852)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83852 SETDB2 SET domain bifurcated histo... NM_001160308.3 99.8% 99.7% 314A>G;1381G>A;1416A>G
2 human 83852 SETDB2 SET domain bifurcated histo... NM_031915.3 98.1% 98% (many diffs)
3 human 83852 SETDB2 SET domain bifurcated histo... NM_001320699.2 96.5% 96.3% (many diffs)
4 human 107303344 SETDB2-PHF11 SETDB2-PHF11 readthrough NM_001320727.2 76.3% 63.3% (many diffs)
5 human 107303344 SETDB2-PHF11 SETDB2-PHF11 readthrough NR_135324.2 48.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2187
ORF length:
2121
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG AGAAAAAAAT GGCGATGCAA AAACTTTCTG GATGGAGCTA GAAGATGATG
121GAAAAGTGGA CTTCATTTTT GAACAAGTAC AAAATGTGCT GCAGTCACTG AAACAAAAGA
181TCAAAGATGG GTCTGCCACC AATAAAGAAT ACATCCAAGC AATGATTCTA GTGAATGAAG
241CAACTATAAT TAACAGTTCA ACATCAATAA AGGATCCTAT GCCTGTGACT CAGAAGGAAC
301AGGAAAACAA ATCCAATGCA TTTCCCTCTA CATCATGTGA AAACTCCTTT CCAGAAGACT
361GTACATTTCT AACAACAGGA AATAAGGAAA TTCTCTCTCT TGAAGATAAA GTTGTAGACT
421TTAGAGAAAA AGACTCATCT TCGAATTTAT CTTACCAAAG TCATGACTGC TCTGGTGCTT
481GTCTGATGAA AATGCCACTG AACTTGAAGG GAGAAAACCC TCTGCAGCTG CCAATCAAAT
541GTCACTTCCA AAGACGACAT GCAAAGACAA ACTCTCATTC TTCAGCACTC CACGTGAGTT
601ATAAAACCCC TTGTGGAAGG AGTCTACGAA ACGTGGAGGA AGTTTTTCGT TACCTGCTTG
661AGACAGAGTG TAACTTTTTA TTTACAGATA ACTTTTCTTT CAATACCTAT GTTCAGTTGG
721CTCGGAATTA CCCAAAGCAA AAAGAAGTTG TTTCTGATGT GGATATTAGC AATGGAGTGG
781AATCAGTGCC CATTTCTTTC TGTAATGAAA TTGACAGTAG AAAGCTCCCA CAGTTTAAGT
841ACAGAAAGAC TGTGTGGCCT CGAGCATATA ATCTAACCAA CTTTTCCAGC ATGTTTACTG
901ATTCCTGTGA CTGCTCTGAG GGCTGCATAG ACATAACAAA ATGTGCATGT CTTCAACTGA
961CAGCAAGGAA TGCCAAAACT TCCCCCTTGT CAAGTGACAA AATAACCACT GGATATAAAT
1021ATAAAAGACT ACAGAGACAG ATTCCTACTG GCATTTATGA ATGCAGCCTT TTGTGCAAAT
1081GTAATCGACA ATTGTGTCAA AACCGAGTTG TCCAACATGG TCCTCAAGTG AGGTTACAGG
1141TGTTCAAAAC TGAGCAGAAG GGATGGGGTG TACGCTGTCT AGATGACATT GACAGAGGGA
1201CATTTGTTTG CATTTATTCA GGAAGATTAC TAAGCAGAGC TAACACTGAA AAATCTTATG
1261GTATTGATGA AAACGGGAGA GATGAGAATA CTATGAAAAA TATATTTTCA AAAAAGAGGA
1321AATTAGAAGT TGCATGTTCA GATTGTGAAG TTGAAGTTCT CCCATTAGGA TTGGAAACAC
1381ATCCTAGAAC TGCTAAAACT GAGAAATGTC CACCAAAGTT CAGTAATAAT CCCAAGGAGC
1441TTACTATGGA AACGAAATAT GATAATATTT CAAGAATTCA GTATCATTCA GTTATTAGAG
1501ATCCTGAATC CAAGACAGCC ATTTTTCAAC ACAATGGGAA AAAAATGGAA TTTGTTTCCT
1561CGGAGTCTGT CACTCCAGAA GATAATGATG GATTTAAACC ACCCCGAGAG CATCTGAACT
1621CTAAAACCAA GGGAGCACAA AAGGACTCAA GTTCAAACCA TGTTGATGAG TTTGAAGATA
1681ATCTGCTGAT TGAATCAGAT GTGATAGATA TAACTAAATA TAGAGAAGAA ACTCCACCAA
1741GGAGCAGATG TAACCAGGCG ACCACATTGG ATAATCAGAA TATTAAAAAG GCAATTGAGG
1801TTCAAATTCA GAAACCCCAA GAGGGACGAT CTACAGCATG TCAAAGACAG CAGGTATTTT
1861GTGATGAAGA GTTGCTAAGT GAAACCAAGA ATACTTCATC TGATTCTCTA ACAAAGTTCA
1921ATAAAGGGAA TGTGTTTTTA TTGGATGCCA CAAAAGAAGG AAATGTCGGC CGCTTCCTTA
1981ATCATAGTTG TTGCCCAAAT CTCTTGGTAC AGAATGTTTT TGTAGAAACA CACAACAGGA
2041ATTTTCCATT GGTGGCATTC TTCACCAACA GGTATGTGAA AGCAAGAACA GAGCTAACAT
2101GGGATTATGG CTATGAAGCT GGGACTGTGC CTGAGAAGGA AATCTTCTGC CAATGTGGGG
2161TTAATAAATG TAGAAAAAAA ATATTATACC CAACTTTCTT GTACAAAGTt ggcattataa
2221gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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