Construct: ORF ccsbBroadEn_09174
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005753.1_s300c1, BRDN0000389398
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C2orf88 (84281)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84281 | C2orf88 | chromosome 2 open reading f... | NM_001042519.2 | 99.6% | 98.9% | 167C>T |
| 2 | human | 84281 | C2orf88 | chromosome 2 open reading f... | NM_001042520.1 | 99.6% | 98.9% | 167C>T |
| 3 | human | 84281 | C2orf88 | chromosome 2 open reading f... | NM_001042521.2 | 99.6% | 98.9% | 167C>T |
| 4 | human | 84281 | C2orf88 | chromosome 2 open reading f... | NM_032321.3 | 99.6% | 98.9% | 167C>T |
| 5 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_005246905.1 | 99.6% | 98.9% | 167C>T |
| 6 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_006712795.3 | 99.6% | 98.9% | 167C>T |
| 7 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_011511982.1 | 99.6% | 98.9% | 167C>T |
| 8 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_011511983.1 | 99.6% | 98.9% | 167C>T |
| 9 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_011511984.3 | 99.6% | 98.9% | 167C>T |
| 10 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_011511985.3 | 99.6% | 98.9% | 167C>T |
| 11 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_011511986.2 | 99.6% | 98.9% | 167C>T |
| 12 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_017005096.1 | 99.6% | 98.9% | 167C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 351
- ORF length:
- 285
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CTGCATGAAA TCAAAGCAAA CTTTCCCATT TCCTACCATA TATGAAGGTG 121 AGAAGCAGCA TGAGAGTGAA GAACCCTTTA TGCCAGAAGA GAGATGTCTA CCTAGGATGG 181 CTTCTCCAGT TAATGTCAAA GAGGAAGTGA AGGAACCTCC AGGGACCAAT ATTGTGATCT 241 TGGAATATGC ACACCGCCTG TCTCAGGATA TCTTGTGTGA TGCCTTGCAG CAATGGGCAT 301 GCAATAACAT CAAGTACCAT GACATTCCAT ACATTGAGAG TGAGGGGCCT TGCCCAACTT 361 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac