Construct: ORF ccsbBroadEn_09190
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018210.1_s300c1, BRDN0000396685
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SYVN1 (84447)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84447 | SYVN1 | synoviolin 1 | NM_172230.3 | 99.9% | 99.8% | 982A>C |
| 2 | human | 84447 | SYVN1 | synoviolin 1 | XM_011545303.3 | 99.9% | 99.8% | 982A>C |
| 3 | human | 84447 | SYVN1 | synoviolin 1 | NM_032431.3 | 99.7% | 99.6% | 982A>C;1230_1231insGCA |
| 4 | mouse | 74126 | Syvn1 | synovial apoptosis inhibito... | NM_001164709.1 | 89.8% | 94.8% | (many diffs) |
| 5 | mouse | 74126 | Syvn1 | synovial apoptosis inhibito... | NM_028769.5 | 89.8% | 94.8% | (many diffs) |
| 6 | mouse | 74126 | Syvn1 | synovial apoptosis inhibito... | XM_006531850.3 | 89.8% | 94.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1917
- ORF length:
- 1851
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT CCGCACGGCA GTGATGATGG CGGCCAGCCT GGCGCTGACC GGGGCTGTGG 121 TGGCTCACGC CTACTACCTC AAACACCAGT TCTACCCCAC TGTGGTGTAC CTGACCAAGT 181 CCAGCCCCAG CATGGCAGTC CTGTACATCC AGGCCTTTGT CCTTGTCTTC CTTCTGGGCA 241 AGGTGATGGG CAAGGTGTTC TTTGGGCAAC TGAGGGCAGC AGAGATGGAG CACCTTCTGG 301 AACGTTCCTG GTACGCCGTC ACAGAGACTT GTCTGGCCTT CACCGTTTTT CGGGATGACT 361 TCAGCCCCCG CTTTGTTGCA CTCTTCACTC TTCTTCTCTT CCTCAAATGT TTCCACTGGC 421 TGGCTGAGGA CCGTGTGGAC TTTATGGAAC GCAGCCCCAA CATCTCCTGG CTCTTTCACT 481 GCCGCATTGT CTCTCTTATG TTCCTCCTGG GCATCCTGGA CTTCCTCTTC GTCAGCCACG 541 CCTATCACAG CATCCTGACC CGTGGGGCCT CTGTGCAGCT GGTGTTTGGC TTTGAGTATG 601 CCATCCTGAT GACGATGGTG CTCACCATCT TCATCAAGTA TGTGCTGCAC TCCGTGGACC 661 TCCAGAGTGA GAACCCCTGG GACAACAAGG CTGTGTACAT GCTCTACACA GAGCTGTTTA 721 CAGGCTTCAT CAAGGTTCTG CTGTACATGG CCTTCATGAC CATCATGATC AAGGTGCACA 781 CCTTCCCACT CTTTGCCATC CGGCCCATGT ACCTGGCCAT GAGACAGTTC AAGAAAGCTG 841 TGACAGATGC CATCATGTCT CGCCGAGCCA TCCGCAACAT GAACACCCTG TATCCAGATG 901 CCACCCCAGA GGAGCTCCAG GCAATGGACA ATGTCTGCAT CATCTGCCGA GAAGAGATGG 961 TGACTGGTGC CAAGAGACTG CCCTGCAACC ACATTTTCCA TACCAGCTGC CTGCGCTCCT 1021 GGTTCCAGCG GCAGCAGACC TGCCCCCCCT GCCGTATGGA TGTCCTTCGT GCATCGCTGC 1081 CAGCGCAGTC ACCACCACCC CCGGAGCCTG CGGATCAGGG GCCACCCCCT GCCCCCCACC 1141 CCCCACCACT CTTGCCTCAG CCCCCCAACT TCCCCCAGGG CCTCCTGCCT CCTTTTCCTC 1201 CAGGCATGTT CCCACTGTGG CCCCCCATGG GCCCCTTTCC ACCTGTCCCG CCTCCCCCCA 1261 GCTCAGGAGA GGCTGTGGCT CCTCCATCCA CCAGTGCAGC AGCCCTTTCT CGGCCCAGTG 1321 GAGCAGCTAC AACCACAGCT GCTGGCACCA GTGCTACTGC TGCTTCTGCC ACAGCATCTG 1381 GCCCAGGCTC TGGCTCTGCC CCAGAGGCTG GCCCTGCCCC TGGTTTCCCC TTCCCTCCTC 1441 CCTGGATGGG TATGCCCCTG CCTCCACCCT TTGCCTTCCC CCCAATGCCT GTGCCCCCTG 1501 CGGGCTTTGC TGGGCTGACC CCAGAGGAGC TACGAGCTCT GGAGGGCCAT GAGCGGCAGC 1561 ACCTGGAGGC CCGGCTGCAG AGCCTGCGTA ACATCCACAC ACTGCTGGAC GCCGCCATGC 1621 TGCAGATCAA CCAGTACCTC ACCGTGCTGG CCTCCTTGGG GCCCCCCCGG CCTGCCACTT 1681 CAGTCAACTC CACTGAGGAG ACTGCCACTA CAGTTGTTGC TGCTGCCTCC TCCACCAGCA 1741 TCCCTAGCTC AGAGGCCACG ACCCCAACCC CAGGAGCCTC CCCACCAGCC CCTGAAATGG 1801 AAAGGCCTCC AGCTCCTGAG TCAGTGGGCA CAGAGGAGAT GCCTGAGGAT GGAGAGCCCG 1861 ATGCAGCAGA GCTCCGCCGG CGCCGCCTGC AGAAGCTGGA GTCTCCTGTT GCCCACTGCC 1921 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1981 aac