Construct: ORF ccsbBroadEn_09198
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000803.1_s300c1, BRDN0000389360
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HOPX (84525)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84525 | HOPX | HOP homeobox | NM_001145459.1 | 99.5% | 98.6% | 215C>T |
| 2 | human | 84525 | HOPX | HOP homeobox | NM_139211.4 | 99.5% | 98.6% | 215C>T |
| 3 | human | 84525 | HOPX | HOP homeobox | NM_139212.3 | 99.5% | 98.6% | 215C>T |
| 4 | human | 84525 | HOPX | HOP homeobox | XM_017008730.2 | 99.5% | 98.6% | 215C>T |
| 5 | human | 84525 | HOPX | HOP homeobox | XM_017008731.2 | 99.5% | 98.6% | 215C>T |
| 6 | human | 84525 | HOPX | HOP homeobox | XM_017008732.1 | 99.5% | 98.6% | 215C>T |
| 7 | human | 84525 | HOPX | HOP homeobox | XM_017008733.1 | 99.5% | 98.6% | 215C>T |
| 8 | human | 84525 | HOPX | HOP homeobox | XM_017008734.1 | 99.5% | 98.6% | 215C>T |
| 9 | human | 84525 | HOPX | HOP homeobox | XM_017008728.1 | 82.5% | 81.8% | 1_45del;260C>T |
| 10 | human | 84525 | HOPX | HOP homeobox | NM_032495.6 | 79.8% | 79.1% | 1_54del;269C>T |
| 11 | human | 84525 | HOPX | HOP homeobox | XM_017008729.2 | 65.4% | 64.8% | 1_114del;329C>T |
| 12 | human | 84525 | HOPX | HOP homeobox | XM_006714052.2 | 56.3% | 48.6% | (many diffs) |
| 13 | human | 84525 | HOPX | HOP homeobox | NM_001145460.1 | 55.8% | 48.6% | (many diffs) |
| 14 | mouse | 74318 | Hopx | HOP homeobox | NM_001159900.1 | 89% | 90.4% | (many diffs) |
| 15 | mouse | 74318 | Hopx | HOP homeobox | NM_001159901.1 | 89% | 90.4% | (many diffs) |
| 16 | mouse | 74318 | Hopx | HOP homeobox | NM_175606.3 | 89% | 90.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 285
- ORF length:
- 219
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GGCGGAGACC GCGAGCGGCC CCACAGAGGA CCAGGTGGAA ATCCTGGAGT 121 ACAACTTCAA CAAGGTCGAC AAGCACCCGG ATTCCACCAC GCTGTGCCTC ATCGCGGCCG 181 AGGCAGGCCT TTCCGAGGAG GAGACCCAGA AATGGTTTAA GCAGCGCCTG GCAAAGTGGC 241 GGCGCTCAGA AGGCCTGCCC TCAGAGTGCA GATCCGTCAT AGACAACCCA ACTTTCTTGT 301 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c