Transcript: Human NM_001145460.1

Homo sapiens HOP homeobox (HOPX), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-09-21
Taxon:
Homo sapiens (human)
Gene:
HOPX (84525)
Length:
1682
CDS:
536..874

Additional Resources:

NCBI RefSeq record:
NM_001145460.1
NBCI Gene record:
HOPX (84525)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001145460.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000016404 GAAATGGTTTAAGCAGCGCCT pLKO.1 863 CDS 100% 0.540 0.756 N HOPX n/a
2 TRCN0000274823 ATCACCTCCCAGTAGCAATTT pLKO_005 1245 3UTR 100% 13.200 9.240 N HOPX n/a
3 TRCN0000016406 AGAGTGCAGATCCGTCACAGA pLKO.1 917 3UTR 100% 2.640 1.848 N HOPX n/a
4 TRCN0000285256 AGAGTGCAGATCCGTCACAGA pLKO_005 917 3UTR 100% 2.640 1.848 N HOPX n/a
5 TRCN0000016405 GTACAACTTCAACAAGGTCGA pLKO.1 643 CDS 100% 2.160 1.512 N HOPX n/a
6 TRCN0000274886 TTCCACCACGCTGTGCCTCAT pLKO_005 676 CDS 100% 1.350 0.945 N HOPX n/a
7 TRCN0000016403 CCAGGTGGAAATCCTGGAGTA pLKO.1 625 CDS 100% 0.405 0.284 N HOPX n/a
8 TRCN0000274887 AGGAGATGGCAGGCATTGACA pLKO_005 941 3UTR 100% 3.000 1.800 N HOPX n/a
9 TRCN0000070501 AGTACAACTTCAACAAGGTCA pLKO.1 642 CDS 100% 2.640 1.848 N Hopx n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001145460.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09198 pDONR223 100% 55.8% 48.6% None (many diffs) n/a
2 ccsbBroad304_09198 pLX_304 0% 55.8% 48.6% V5 (many diffs) n/a
3 TRCN0000466149 ACATCACGTACCTGTTAGATCTTT pLX_317 100% 55.8% 48.6% V5 (many diffs) n/a
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