Construct: ORF ccsbBroadEn_09272
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014587.1_s300c1, BRDN0000390530
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SERPINB11 (89778)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 89778 | SERPINB11 | serpin family B member 11 (... | NM_001370475.1 | 99.1% | 98.4% | (many diffs) |
| 2 | human | 89778 | SERPINB11 | serpin family B member 11 (... | NM_080475.4 | 99.1% | 98.4% | (many diffs) |
| 3 | human | 89778 | SERPINB11 | serpin family B member 11 (... | NM_001291278.2 | 77.2% | 77% | (many diffs) |
| 4 | human | 89778 | SERPINB11 | serpin family B member 11 (... | NM_001291279.2 | 54.6% | 54.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1242
- ORF length:
- 1176
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG TTCTCTCAGC ACAGCTAACG TTGAATTTTG CCTTGATGTG TTCAAAGAGC 121 TGAACAGTAA CAACATAGGA GATAACATCT TCTTTTCTTC GCTGAGTCTG CTTTATGCTC 181 TAAGCATGGT CCTCCTTGGT GCCAGGGGAG AGACTGCAGA GCAATTGGAG AAGGTGCTTC 241 ATTTTAGTCA TACTGTAGAC TCATTAAAAC CAGGGTTCAA GGACTCACCT AAGTGCAGCC 301 AAGCTGGAAG AATTCATTCC GAGTTTGGTG TCGAATTCTC TCAAATCAAC CAGCCAGACT 361 CTAACTGTAC CCTCAGCATT GCCAACAGGC TCTACGGGAC AAAGACGATG GCATTTCATC 421 AGCAATATTT AAGCTGTTCT GAGAAATGGT ATCAAGCCAG GTTGCAAACT GTGGATTTTG 481 AACAGTCTAC AGAAGAAACG AGGAAAATGA TTAATGCTTG GGTTGAAAAT AAAACTAATG 541 GAAAAGTCGC AAATCTCTTT GGAAAGAGCA CAATTGACCC TTCATCTGTA ATGGTCCTGG 601 TGAATACCAT ATATTTCAAA GGACAAAGGC AAAATAAATT TCAAGTAAGA GAGACAGTTA 661 AAAGTCCTTT TCAGCTAAGT GAAGGTAAAA ATGTAACTGT GGAAATGATG TATCAAATTG 721 GAACATTTAA ACTGGCCTTT GTAAAGGAGC CGCAGATGCA AGTTCTTGAG CTGCCCTACG 781 TTAACAACAA ATTAAGCATG ATTATTCTGC TTCCAGTAGG CATAGCTAAT CTGAAACAGA 841 TAGAAAAGCA GCTGAATTCG GGGACGTTTC ATGAGTGGAC AAGCTCTTCT AACATGATGG 901 AAAGAGAAGT TGAAGTACAC CTCCCCAGAT TCAAACTTGA AATTAAGTAT GAGCTAAATT 961 CCCTGTTAAA ACCTCTAGGG GTGACAGATC TCTTCAACCA GGTCAAAGCT GATCTTTCTG 1021 GAATGTCACC AACCAAGGGC CTATATTTAT CAAAAGCTAT CCACAAGTCA TACCTGGATG 1081 TCAGCGAAGA GGGCACGGAG GCAGCAGCAG CCACTGGGGA CAGCATCGCT GTAAAAAGCC 1141 TACCAATGAG AGCTCAGTTC AAGGCGAACC ACCCCTTCCT GTTCTTTATA AGGCACACTC 1201 ATACCAACAC GATCCTATTC TGTGGCAAGC TTGCCTCTCC CTACCCAACT TTCTTGTACA 1261 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac