Construct: ORF ccsbBroadEn_09283

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002000.1_s300c1, BRDN0000393986
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMEM116 (89894)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 89894 TMEM116 transmembrane protein 116 NM_001294314.1 99.8% 100% 429A>G
2 human 89894 TMEM116 transmembrane protein 116 NM_138341.2 99.8% 100% 429A>G
3 human 89894 TMEM116 transmembrane protein 116 XM_011538957.1 99.8% 100% 429A>G
4 human 89894 TMEM116 transmembrane protein 116 XM_017020190.2 99.8% 100% 429A>G
5 human 89894 TMEM116 transmembrane protein 116 XM_017020192.2 99.8% 100% 429A>G
6 human 89894 TMEM116 transmembrane protein 116 XM_024449265.1 99.8% 100% 429A>G
7 human 89894 TMEM116 transmembrane protein 116 XM_011538958.1 90.4% 90.6% 0_1ins69;360A>G
8 human 89894 TMEM116 transmembrane protein 116 XM_024449267.1 90.4% 90.6% 0_1ins69;360A>G
9 human 89894 TMEM116 transmembrane protein 116 XM_024449268.1 90.4% 90.6% 0_1ins69;360A>G
10 human 89894 TMEM116 transmembrane protein 116 XM_011538953.1 89.2% 89.4% 1_87del;516A>G
11 human 89894 TMEM116 transmembrane protein 116 XM_017020188.2 89.2% 89.4% 1_87del;516A>G
12 human 89894 TMEM116 transmembrane protein 116 XM_024449263.1 89.2% 89.4% 1_87del;516A>G
13 human 89894 TMEM116 transmembrane protein 116 XM_024449264.1 89.2% 89.4% 1_87del;516A>G
14 human 89894 TMEM116 transmembrane protein 116 NM_001193453.1 79.7% 76.5% (many diffs)
15 human 89894 TMEM116 transmembrane protein 116 XM_011538947.2 79.7% 76.5% (many diffs)
16 human 89894 TMEM116 transmembrane protein 116 XM_011538951.2 76.4% 76.5% 1_225del;654A>G
17 human 89894 TMEM116 transmembrane protein 116 NM_001193531.2 72.6% 72.7% 1_276del;705A>G
18 human 89894 TMEM116 transmembrane protein 116 XM_011538949.2 72.6% 72.7% 1_276del;705A>G
19 human 89894 TMEM116 transmembrane protein 116 XM_024449260.1 72.6% 72.7% 1_276del;705A>G
20 human 89894 TMEM116 transmembrane protein 116 XM_006719678.3 67.2% 67.3% 1_357del;786A>G
21 human 89894 TMEM116 transmembrane protein 116 XM_024449259.1 65.9% 66% 1_378del;807A>G
22 human 89894 TMEM116 transmembrane protein 116 XM_024449258.1 63% 63.1% 1_429del;858A>G
23 human 89894 TMEM116 transmembrane protein 116 XM_024449257.1 62% 62.1% 1_447del;876A>G
24 human 89894 TMEM116 transmembrane protein 116 XM_024449266.1 59.2% 46.6% (many diffs)
25 human 89894 TMEM116 transmembrane protein 116 XM_011538948.3 58.1% 53.9% (many diffs)
26 human 89894 TMEM116 transmembrane protein 116 XR_001748914.2 56.1% (many diffs)
27 human 89894 TMEM116 transmembrane protein 116 XM_011538950.2 54.2% 45.5% (many diffs)
28 human 89894 TMEM116 transmembrane protein 116 XM_024449262.1 54.2% 45.5% (many diffs)
29 human 89894 TMEM116 transmembrane protein 116 XM_024449261.1 49.2% 41.4% (many diffs)
30 human 89894 TMEM116 transmembrane protein 116 XM_017020187.2 47.6% 43.4% (many diffs)
31 human 89894 TMEM116 transmembrane protein 116 NR_122119.1 38.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
801
ORF length:
735
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA ACACACCCAG AGTGGACAGA GCACATCTCC ACTGGTGATA GATTATACTT
121GTCGAGTTTG TCAAATGGCC TTTGTTTTCT CAAGCCTGAT ACCTCTGCTA TTGATGACAC
181CTGTATTCTG TCTGGGAAAT ACTAGTGAAT GTTTCCAAAA CTTCAGTCAG AGCCACAAGT
241GTATCTTGAT GCACTCACCA CCATCAGCCA TGGCTGAACT TCCACCTTCT GCCAACACAT
301CTGTCTGTAG CACACTTTAT TTTTATGGTA TCGCCATTTT CCTGGGCAGC TTTGTACTCA
361GCCTCCTTAC CATTATGGTC TTACTTATCC GAGCCCAGAC ATTGTATAAG AAGTTTGTGA
421AGTCAACTGG CTTTCTGGGG AGTGAACAGT GGGCAGTGAT TCACATTGTG GACCAACGGG
481TGCGCTTCTA CCCGGTGGCC TTCTTTTGCT GCTGGGGCCC AGCTGTCATT CTAATGATCA
541TAAAGCTGAC TAAGCCACAG GACACCAAGC TTCACATGGC CCTTTATGTT CTCCAGGCTC
601TAACGGCAAC ATCTCAGGGT CTACTCAACT GTGGAGTATA TGGCTGGACG CAGCACAAAT
661TCCACCAACT AAAGCAGGAG GCTCGGCGTG ATGCAGATAC CCAGACACCA TTATTATGCT
721CACAGAAGAG ATTCTATAGC AGGGGCTTAA ATTCACTGGA ATCCACCCTG ACTTTTCCTG
781CCAGTACTTC TACCATTTTT TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
841attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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