Construct: ORF ccsbBroadEn_09304
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005121.1_s300c1, BRDN0000394991
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PAGE5 (90737)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90737 | PAGE5 | PAGE family member 5 | NM_001013435.3 | 99.6% | 99% | 320A>C |
| 2 | human | 389860 | PAGE2B | PAGE family member 2B | NM_001015038.3 | 94.2% | 88.2% | (many diffs) |
| 3 | human | 389860 | PAGE2B | PAGE family member 2B | XM_011530787.2 | 94.2% | 88.2% | (many diffs) |
| 4 | human | 389860 | PAGE2B | PAGE family member 2B | XM_017029513.1 | 94.2% | 88.2% | (many diffs) |
| 5 | human | 203569 | PAGE2 | PAGE family member 2 | NM_207339.4 | 91.5% | 81.9% | (many diffs) |
| 6 | human | 203569 | PAGE2 | PAGE family member 2 | XM_017029353.1 | 91.5% | 81.9% | (many diffs) |
| 7 | human | 389860 | PAGE2B | PAGE family member 2B | XM_011530786.3 | 90.2% | 84.4% | (many diffs) |
| 8 | human | 90737 | PAGE5 | PAGE family member 5 | NM_130467.5 | 84.3% | 83.8% | 1_60del;380A>C |
| 9 | human | 389860 | PAGE2B | PAGE family member 2B | XM_011530785.2 | 78.1% | 73.1% | (many diffs) |
| 10 | human | 100421746 | LOC100421746 | PAGE family member 5 pseudo... | NR_130179.1 | 61.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 399
- ORF length:
- 330
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcacTAT GAGTGAGCAT GTAACAAGAT CCCAATCCTC AGAAAGAGGA AATGACCAAG 121 AGTCTTCCCA GCCAGTTGGA CCTGTGATTG TCCAGCAGCC CACTGAGGAA AAACGTCAAG 181 AAGAGGAACC ACCAACTGAT AATCAGGGTA TTGCACCTAG TGGGGAGATC AAAAATGAAG 241 GAGCACCTGC TGTTCAAGGG ACTGATGTGG AAGCTTTTCA ACAGGAACTG GCTCTGCTTA 301 AGATAGAGGA TGCACCTGGA GATGGTCCTG ATGTCAGGGA GGGGACTCTG CCCACTTTTG 361 ATCCCACTAA AGTGCTGGAA GCAGGTGCAG GGCAACTATA CCCAACTTTC TTGTACAAAG 421 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac