Construct: ORF ccsbBroadEn_09306
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018121.1_s300c1, BRDN0000385737
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TCEAL8 (90843)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90843 | TCEAL8 | transcription elongation fa... | NM_001006684.1 | 99.7% | 99.1% | 340T>C |
| 2 | human | 90843 | TCEAL8 | transcription elongation fa... | NM_153333.3 | 99.7% | 99.1% | 340T>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 417
- ORF length:
- 351
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA AAAGTCTTGT GAAGAAAATG AGGGAAAACC ACAGAACATG CCAAAGGCCG 121 AGGAAGATCG CCCTTTGGAG GATGTACCAC AGGAGGCAGA AGGAAATCCT CAACCTTCCG 181 AAGAAGGCGT AAGCCAGGAA GCAGAAGGAA ACCCCAGAGG AGGGCCGAAT CAGCCTGGCC 241 AGGGATTTAA AGAGGACACA CCCGTTAGGC ATTTGGACCC TGAAGAAATG ATAAGAGGAG 301 TAGATGAGCT TGAAAGGCTT AGGGAAGAGA TAAGAAGAGT AAGAAACAAG TTTGTGATGA 361 TGCATTGGAA GCAAAGACAT TCACGCAGCC GTCCTTATCC TGTGCGCTTT AGGCCTTGCC 421 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 481 aac