Construct: ORF ccsbBroadEn_09326
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006655.1_s300c1, BRDN0000388712
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C11orf52 (91894)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91894 | C11orf52 | chromosome 11 open reading ... | NM_080659.3 | 99.7% | 99.1% | 68C>G |
| 2 | human | 100528019 | HSPB2-C11orf52 | HSPB2-C11orf52 readthrough ... | NR_037651.1 | 23.6% | 1_483del;551C>G;853_1555del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 435
- ORF length:
- 369
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG AAACCGGGTC TGCTGCGGAG GAAGCTGGAG CTGCCCATCA ACTTTCCAGA 121 AGAAAAAGAA AAGAGGAAGC CAAACAAGAC GGACACTGAA GCCGCAGCCA CAACAGCTGC 181 AGCAGAATCT CCCAAAGGGC CATGAAACAA CAGGACATAC GTATGAACGG GTGTTACAGC 241 AGCAAGGGTC TCAAGAGAGG AGTCCAGGCC TCATGTCGGA AGACAGCAAC TTACATTATG 301 CTGACATTCA AGTGTGCAGC CGTCCCCATG CCCGGGAAGT GAAACACGTG CATTTAGAAA 361 ACGCTACAGA GTATGCGACC CTTCGCTTCC CCCAGGCCAC ACCTCGCTAT GACAGCAAGA 421 ACGGGACCCT GGTGTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 481 tatcaatttg ttgcaacgaa c