Construct: ORF ccsbBroadEn_09360
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016041.1_s300c1, BRDN0000395071
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MYOCD (93649)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 93649 | MYOCD | myocardin | NM_001146312.2 | 99.9% | 100% | 936A>G |
| 2 | human | 93649 | MYOCD | myocardin | XM_017025342.1 | 95.7% | 95.7% | 589_590ins126;810A>G |
| 3 | human | 93649 | MYOCD | myocardin | XM_005256863.1 | 95.6% | 95.6% | 936A>G;2200_2201ins129 |
| 4 | human | 93649 | MYOCD | myocardin | NM_153604.3 | 95% | 95.1% | 936A>G;2056_2057ins144 |
| 5 | human | 93649 | MYOCD | myocardin | XM_005256864.1 | 91.9% | 91.9% | 0_1ins237;699A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3027
- ORF length:
- 2958
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttgTCAACAT GACACTCCTG GGGTCTGAGC ATTCCTTGCT GATTAGGAGC AAGTTCAGAT 121 CAGTTTTACA GTTAAGACTT CAACAAAGAA GGACCCAGGA ACAACTGGCT AACCAAGGCA 181 TAATACCACC ACTGAAACGT CCAGCTGAAT TCCATGAGCA AAGAAAACAT TTGGATAGTG 241 ACAAGGCTAA AAATTCCCTG AAGCGCAAAG CCAGAAACAG GTGCAACAGT GCCGACTTGG 301 TTAATATGCA CATACTCCAA GCTTCCACTG CAGAGAGGTC CATTCCAACT GCTCAGATGA 361 AGCTGAAAAG AGCCCGACTC GCCGATGATC TCAATGAAAA AATTGCTCTA CGACCAGGGC 421 CACTGGAGCT GGTGGAAAAA AACATTCTTC CTGTGGATTC TGCTGTGAAA GAGGCCATAA 481 AAGGTAACCA GGTGAGTTTC TCCAAATCCA CGGATGCTTT TGCCTTTGAA GAGGACAGCA 541 GCAGCGATGG GCTTTCTCCG GATCAGACTC GAAGTGAAGA CCCCCAAAAC TCAGCGGGAT 601 CCCCGCCAGA CGCTAAAGCC TCAGATACCC CTTCGACAGG TTCTCTGGGG ACAAACCAGG 661 ATCTTGCTTC TGGCTCAGAA AATGACAGAA ATGACTCAGC CTCACAGCCC AGCCACCAGT 721 CAGATGCGGG GAAGCAGGGG CTTGGCCCCC CCAGCACCCC CATAGCCGTG CATGCTGCTG 781 TAAAGTCCAA ATCCTTGGGT GACAGTAAGA ACCGCCACAA AAAGCCCAAG GACCCCAAGC 841 CAAAGGTGAA GAAGCTTAAA TATCACCAGT ACATTCCCCC AGACCAGAAG GCAGAGAAGT 901 CCCCTCCACC TATGGACTCA GCCTACGCTC GGCTGCTCCA GCAACAGCAG CTGTTCCTGC 961 AGCTCCAAAT CCTCAGCCAG CAGCAGCAGC AGCAGCAACA CCGGTTCAGC TACCTAGGGA 1021 TGCACCAAGC TCAGCTTAAG GAACCAAATG AACAGATGGT CAGAAATCCA AACTCTTCTT 1081 CAACGCCACT GAGCAATACC CCCTTGTCTC CTGTCAAAAA CAGTTTTTCT GGACAAACTG 1141 GTGTCTCTTC TTTCAAACCA GGCCCACTCC CACCTAACCT GGATGATCTG AAGGTCTCTG 1201 AATTAAGACA ACAGCTTCGA ATTCGGGGCT TGCCTGTGTC AGGCACCAAA ACGGCTCTCA 1261 TGGACCGGCT TCGACCCTTC CAGGACTGCT CTGGCAACCC AGTGCCGAAC TTTGGGGATA 1321 TAACGACTGT CACTTTTCCT GTCACACCCA ACACGCTGCC CAATTACCAG TCTTCCTCTT 1381 CTACCAGTGC CCTGTCCAAC GGCTTCTACC ACTTTGGCAG CACCAGCTCC AGCCCCCCGA 1441 TCTCCCCAGC CTCCTCTGAC CTGTCAGTCG CTGGGTCCCT GCCGGACACC TTCAATGATG 1501 CCTCCCCCTC CTTCGGCCTG CACCCGTCCC CAGTCCACGT GTGCACGGAG GAAAGTCTCA 1561 TGAGCAGCCT GAATGGGGGC TCTGTTCCTT CTGAGCTGGA TGGGCTGGAC TCCGAGAAGG 1621 ACAAGATGCT GGTGGAGAAG CAGAAGGTGA TCAATGAACT CACCTGGAAA CTCCAGCAAG 1681 AGCAGAGGCA GGTGGAGGAG CTGAGGATGC AGCTTCAGAA GCAGAAAAGG AATAACTGTT 1741 CAGAGAAGAA GCCGCTGCCT TTCCTGGCTG CCTCCATCAA GCAGGAAGAG GCTGTCTCCA 1801 GCTGTCCTTT TGCATCCCAA GTACCTGTGA AAAGACAAAG CAGCAGCTCA GAGTGTCACC 1861 CACCGGCTTG TGAAGCTGCT CAACTCCAGC CTCTTGGAAA TGCTCATTGT GTGGAGTCCT 1921 CAGATCAAAC CAATGTACTT TCTTCCACAT TTCTCAGCCC CCAGTGTTCC CCTCAGCATT 1981 CACCGCTGGG GGCTGTGAAA AGCCCACAGC ACATCAGTTT GCCCCCATCA CCCAACAACC 2041 CTCACTTTCT GCCCTCATCC TCCGGGGCCC AGGGAGAAGG GCACAGGGTC TCCTCGCCCA 2101 TCAGCAGCCA GGTGTGCACT GCACAGAACT CAGGAGCACA CGATGGCCAT CCTCCAAGCT 2161 TCTCTCCCCA TTCTTCCAGC CTCCACCCGC CCTTCTCTGG AGCCCAAGCA GACAGCAGTC 2221 ATGGTGCCGG GGGAAACCCT TGTCCCAAAA GCCCATGTGT ACAGCAAAAG ATGGCTGGTT 2281 TACACTCTTC TGATAAGGTG GGGCCAAAGT TTTCAATTCC ATCCCCAACT TTTTCTAAGT 2341 CAAGTTCAGC AATTTCAGAG GTAACACAGC CTCCATCCTA TGAAGATGCC GTAAAGCAGC 2401 AAATGACCCG GAGTCAGCAG ATGGATGAAC TCCTGGACGT GCTTATTGAA AGCGGAGAAA 2461 TGCCAGCAGA CGCTAGAGAG GATCACTCAT GTCTTCAAAA AGTCCCAAAG ATACCCAGAT 2521 CTTCCCGAAG TCCAACTGCT GTCCTCACCA AGCCCTCGGC TTCCTTTGAA CAAGCCTCTT 2581 CAGGCAGCCA GATCCCCTTT GATCCCTATG CCACCGACAG TGATGAGCAT CTTGAAGTCT 2641 TATTAAATTC CCAGAGCCCC CTAGGAAAGA TGAGTGATGT CACCCTTCTA AAAATTGGGA 2701 GCGAAGAGCC TCACTTTGAT GGGATAATGG ATGGATTCTC TGGGAAGGCT GCAGAAGACC 2761 TCTTCAATGC ACATGAGATC TTGCCAGGCC CCCTCTCTCC AATGCAGACA CAGTTTTCAC 2821 CCTCTTCTGT GGACAGCAAT GGGCTGCAGT TAAGCTTCAC TGAATCTCCC TGGGAAACCA 2881 TGGAGTGGCT GGACCTCACT CCGCCAAATT CCACACCAGG CTTTAGCGCC CTCACCACCA 2941 GCAGCCCCAG CATCTTCAAC ATCGATTTCC TGGATGTCAC TGATCTCAAT TTGAATTCTT 3001 CCATGGACCT TCACTTGCAG CAGTGGTTGC CAACTTTCTT GTACAAAGTt ggcattataa 3061 gaaagcattg cttatcaatt tgttgcaacg aac