Construct: ORF ccsbBroadEn_09373
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002690.1_s300c1, BRDN0000388873
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GTF3C6 (112495)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 112495 | GTF3C6 | general transcription facto... | NM_138408.4 | 99.5% | 99% | 8C>T;639_639delTinsCT |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 708
- ORF length:
- 642
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGTGGCGGCG GACGAGCGGA GTCCAGAGGA CGGAGAAGAC GAGGAAGAGG 121 AGGAGCAGTT GGTTCTGGTG GAATTATCAG GAATTATTGA TTCAGACTTC CTCTCAAAAT 181 GTGAAAATAA ATGCAAGGTT TTGGGCATTG ACACTGAGAG GCCCATTCTG CAAGTGGACA 241 GCTGTGTCTT TGCTGGGGAG TATGAAGACA CTCTAGGGAC CTGTGTTATA TTTGAAGAAA 301 ATGTTGAACA TGCTGATACA GAAGGCAATA ATAAAACAGT GCTAAAATAT AAATGCCATA 361 CAATGAAGAA GCTCAGCATG ACAAGAACTC TCCTGACAGA GAAGAAGGAA GGAGAAGAAA 421 ACATAGGTGG GGTGGAATGG CTGCAAATAA AGGATAATGA TTTCTCCTAT CGACCCAACA 481 TGATTTGTAA CTTTCTACAT GAAAATGAAG ACGAAGAAGT GGTAGCTTCA GCCCCAGATA 541 AATCTTTGGA ATTGGAAGAG GAAGAGATTC AAATGAACGA CAGTTCAAAC CTGAGTTGTG 601 AACAGGAGAA ACCAATGCAC TTGGAAATAG AAGATTCTGG TCCTCTTATT GATATACCTT 661 CTGAGACAGA AGGTTCTGTT TTTATGGAAA CTCAAATGCT GCCCTTACCC AACTTTCTTG 721 TACAAAGTtg gcattataag aaagcattgc ttatcaattt gttgcaacga ac