Construct: ORF ccsbBroadEn_09398
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004831.1_s300c1, BRDN0000390538
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PGLYRP3 (114771)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114771 | PGLYRP3 | peptidoglycan recognition p... | NM_052891.2 | 99.9% | 100% | 1002C>T |
| 2 | human | 114771 | PGLYRP3 | peptidoglycan recognition p... | XM_011509119.1 | 99.9% | 100% | 1002C>T |
| 3 | human | 114771 | PGLYRP3 | peptidoglycan recognition p... | XM_011509120.2 | 95.7% | 95.6% | (many diffs) |
| 4 | human | 114771 | PGLYRP3 | peptidoglycan recognition p... | XM_011509118.1 | 90.3% | 90.4% | 55_162del;1110C>T |
| 5 | human | 114771 | PGLYRP3 | peptidoglycan recognition p... | XR_921736.1 | 50.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1089
- ORF length:
- 1023
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GACGCTGCCA TGGCTTCTTG CCTTCTTCAT TCTGGGTCTC CAGGCTTGGG 121 ATACTCCCAC CATCGTCTCC CGCAAGGAGT GGGGGGCAAG ACCGCTCGCC TGCAGGGCCC 181 TGCTGACCCT GCCTGTGGCC TACATCATCA CAGACCAGCT CCCAGGGATG CAGTGCCAGC 241 AGCAGAGCGT TTGCAGCCAG ATGCTGCGGG GGTTGCAGTC CCATTCCGTC TACACCATAG 301 GCTGGTGCGA CGTGGCGTAC AACTTCCTGG TTGGGGATGA TGGCAGGGTG TATGAAGGTG 361 TTGGCTGGAA CATCCAAGGC TTGCACACCC AGGGCTACAA CAACATTTCC CTGGGCATCG 421 CCTTCTTTGG CAATAAGATA GGCAGCAGTC CCAGCCCTGC TGCCTTATCA GCTGCAGAGG 481 GTCTGATCTC CTATGCCATC CAGAAGGGTC ACCTGTCGCC CAGGTATATT CAGCCACTTC 541 TTCTGAAAGA AGAGACCTGC CTGGACCCTC AACATCCAGT GATGCCCAGG AAGGTTTGCC 601 CCAACATCAT CAAACGATCT GCTTGGGAAG CCAGAGAGAC ACACTGCCCT AAAATGAACC 661 TCCCAGCCAA ATATGTCATC ATCATCCACA CCGCTGGCAC AAGCTGCACT GTATCCACAG 721 ACTGCCAGAC TGTCGTCCGA AACATACAGT CCTTTCACAT GGACACACGG AACTTTTGTG 781 ACATTGGATA TCACTTCCTG GTGGGCCAGG ATGGTGGCGT GTATGAAGGG GTTGGATGGC 841 ACATCCAAGG CTCTCACACT TATGGATTCA ACGATATTGC CCTAGGAATT GCCTTCATCG 901 GCTACTTTGT AGAAAAGCCT CCAAATGCTG CAGCGCTGGA GGCGGCCCAG GACCTGATCC 961 AGTGTGCCGT GGTTGAGGGG TACCTGACTC CAAACTACCT GCTGATGGGC CACAGTGACG 1021 TGGTCAACAT CCTGTCCCCT GGGCAGGCTT TGTATAACAT CATCAGTACC TGGCCTCATT 1081 TCAAGCACTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1141 tttgttgcaa cgaac