Construct: ORF ccsbBroadEn_09400

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000524.1_s300c1, BRDN0000457205
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ESCO1 (114799)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114799 ESCO1 establishment of sister chr... NM_052911.3 99.9% 99.8% 662C>T;1311G>A
2 human 114799 ESCO1 establishment of sister chr... XM_011525798.1 99.9% 99.8% 662C>T;1311G>A
3 human 114799 ESCO1 establishment of sister chr... XM_011525799.3 96.3% 96.3% 662C>T;1311G>A;1952_1953ins90
4 human 114799 ESCO1 establishment of sister chr... XR_001753137.2 54.1% (many diffs)
5 human 114799 ESCO1 establishment of sister chr... XR_001753138.1 52.7% (many diffs)
6 mouse 77805 Esco1 establishment of sister chr... XM_006526353.3 35.3% 34.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2589
ORF length:
2520
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GATGTCCATT CAGGAGAAAT CAAAAGAGAA TTCCTCCAAA GTTACTAAAA
121AAAGTGACGA TAAGAATTCA GAAACAGAAA TTCAGGATTC TCAAAAGAAT CTAGCAAAAA
181AATCAGGTCC AAAGGAGACT ATAAAATCAC AGGCTAAATC TTCCAGTGAA AGTAAAATAA
241ATCAGCCAGA ATTGGAAACA CGCATGAGTA CAAGGTCATC AAAGGCAGCA TCTAATGATA
301AAGCTACTAA ATCCATTAAT AAAAATACGG TGACTGTGAG GGGATATTCA CAAGAATCTA
361CAAAAAAGAA ATTATCTCAG AAAAAATTAG TACATGAAAA CCCTAAAGCA AATGAACAGC
421TTAACCGGAG ATCACAAAGG CTACAACAAT TAACAGAGGT TTCAAGAAGG TCGTTACGCA
481GTAGAGAAAT TCAGGGTCAA GTTCAAGCAG TTAAACAGAG TTTGCCACCA ACTAAAAAAG
541AGCAGTGTAG CAGTACTCAG AGTAAATCTA ATAAAACAAG TCAAAAACAT GTGAAGAGAA
601AAGTACTGGA AGTAAAGTCT GACTCTAAAG AAGATGAAAA TCTAGTAATT AATGAAGTAA
661TAAATTCTCC CAAAGGGAAA AAACGCAAGG TAGAACATCA GACAGCTTGT GCTTGTAGTT
721CTCAATGCAT GCAAGGATCT GAAAAGTGTC CTCAGAAGAC TACTAGAAGA GACGAAACGA
781AACCTGTGCC TGTAACTTCT GAGGTGAAAA GATCAAAAAT GGCTACTTCA GTGGTCCCGA
841AAAAGAATGA GATGAAGAAG TCGGTTCATA CACAAGTGAA TACTAACACA ACACTCCCAA
901AAAGTCCACA GCCATCAGTG CCTGAACAAA GTGATAATGA GCTGGAGCAA GCAGGAAAGA
961GCAAACGAGG TAGTATTCTC CAGCTCTGTG AAGAAATTGC TGGTGAAATT GAGTCAGATA
1021ATGTAGAGGT AAAAAAGGAA TCTTCACAAA TGGAAAGTGT AAAGGAAGAA AAGCCCACAG
1081AAATAAAATT GGAAGAGACC AGTGTTGAAA GACAAATACT TCATCAGAAG GAAACAAATC
1141AGGATGTGCA ATGTAATCGT TTTTTCCCAA GTAGAAAAAC AAAGCCTGTG AAATGTATAC
1201TAAATGGAAT AAACAGCTCA GCCAAGAAGA ACTCCAACTG GACTAAAATT AAACTCTCAA
1261AATTTAACTC TGTGCAGCAC AATAAGTTGG ACTCTCAAGT TTCCCCTAAA TTAGGCTTAT
1321TACGAACCAG TTTTTCACCA CCAGCTTTAG AAATGCATCA TCCAGTGACT CAAAGTACAT
1381TTTTAGGGAC AAAGCTACAT GATAGAAATA TAACTTGCCA GCAGGAAAAA ATGAAAGAAA
1441TTAATTCTGA AGAAGTGAAA ATTAATGATA TTACAGTAGA AATTAATAAA ACCACAGAAA
1501GGGCTCCTGA AAATTGTCAT TTGGCCAATG AGATAAAACC TTCTGACCCA CCATTGGATA
1561ATCAGATGAA ACATTCTTTT GATTCAGCAT CAAATAAGAA TTTCAGCCAA TGTTTGGAAT
1621CCAAGCTAGA AAACAGTCCA GTGGAAAATG TTACTGCTGC TTCGACTCTG CTCAGTCAAG
1681CAAAAATTGA TACAGGAGAG AATAAATTTC CAGGTTCAGC TCCCCAACAG CATAGTATTC
1741TCAGTAACCA GACATCTAAA AGCAGTGATA ACAGGGAGAC ACCACGAAAT CATTCTTTGC
1801CTAAGTGTAA TTCCCATTTG GAGATAACAA TTCCAAAGGA CTTGAAACTA AAAGAAGCAG
1861AGAAAACTGA TGAAAAACAG TTGATTATAG ATGCAGGACA AAAAAGATTT GGAGCAGTTT
1921CTTGTAATGT TTGTGGAATG CTGTATACAG CTTCAAATCC AGAAGATGAA ACACAGCATC
1981TGCTTTTCCA CAACCAGTTT ATAAGTGCTG TTAAATATGT GGGCTGGAAG AAAGAAAGAA
2041TTCTGGCTGA ATACCCTGAT GGCAGGATAA TAATGGTTCT TCCTGAAGAC CCAAAGTATG
2101CCCTGAAAAA GGTTGACGAG ATTAGAGAGA TGGTTGACAA TGATTTAGGT TTTCAACAGG
2161CTCCACTAAT GTGCTATTCC AGAACTAAAA CACTTCTCTT CATTTCCAAT GACAAAAAAG
2221TAGTTGGCTG CCTAATTGCG GAACATATCC AATGGGGCTA CAGAGTTATA GAAGAGAAAC
2281TTCCAGTTAT CAGGTCAGAA GAAGAAAAAG TCAGATTTGA AAGGCAAAAA GCCTGGTGCT
2341GCTCAACATT ACCAGAGCCT GCAATCTGCG GGATCAGTCG AATATGGGTA TTCAGCATGA
2401TGCGTCGGAA GAAAATTGCT TCTCGCATGA TTGAATGCCT AAGGAGTAAC TTTATATATG
2461GCTCATATTT GAGCAAAGAA GAAATTGCTT TCTCAGATCC CACTCCTGAT GGAAAGCTGT
2521TTGCAACACA GTACTGTGGC ACTGGTCAAT TTCTGGTATA TAATTTTATT AATGGACAGA
2581ATAGCACGTT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa
2641tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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