Construct: ORF ccsbBroadEn_09462
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016599.1_s300c1, BRDN0000387876
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PNLIPRP3 (119548)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 119548 | PNLIPRP3 | pancreatic lipase related p... | NM_001011709.3 | 99.8% | 99.5% | 1141G>A;1144A>G |
| 2 | human | 119548 | PNLIPRP3 | pancreatic lipase related p... | XM_011539276.1 | 81.8% | 81.3% | 808_809ins252;889G>A;892A>G |
| 3 | human | 119548 | PNLIPRP3 | pancreatic lipase related p... | XM_011539277.1 | 78.2% | 76.8% | (many diffs) |
| 4 | human | 119548 | PNLIPRP3 | pancreatic lipase related p... | XM_011539278.1 | 77.3% | 77% | 0_1ins315;826G>A;829A>G |
| 5 | human | 119548 | PNLIPRP3 | pancreatic lipase related p... | XM_011539279.1 | 77.3% | 77% | 0_1ins315;826G>A;829A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1470
- ORF length:
- 1401
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTTGGAATT TGGATTGTTG CATTCTTGTT CTTTGGCACA TCAAGAGGAA 121 AAGAAGTTTG CTATGAAAGG TTAGGGTGTT TCAAAGATGG TTTACCATGG ACCAGGACTT 181 TCTCAACAGA GTTGGTAGGT TTACCCTGGT CTCCAGAGAA GATAAACACT CGTTTCCTGC 241 TCTACACTAT ACACAATCCC AATGCCTATC AGGAGATCAG TGCGGTTAAT TCTTCAACTA 301 TCCAAGCCTC ATATTTTGGA ACAGACAAGA TCACCCGTAT CAACATAGCT GGATGGAAAA 361 CAGATGGCAA ATGGCAGAGA GACATGTGCA ATGTGTTGCT ACAGCTGGAA GATATAAATT 421 GCATTAATTT AGATTGGATC AACGGTTCAC GGGAATACAT CCATGCTGTA AACAATCTCC 481 GTGTTGTTGG TGCTGAGGTG GCTTATTTTA TTGATGTTCT CATGAAAAAA TTTGAATATT 541 CCCCTTCTAA AGTGCACTTG ATTGGCCACA GCTTGGGAGC ACACCTGGCT GGGGAAGCTG 601 GGTCAAGGAT ACCAGGCCTT GGAAGAATAA CTGGGTTGGA CCCAGCTGGG CCATTTTTCC 661 ACAACACTCC AAAGGAAGTC AGGCTAGACC CCTCGGATGC CAACTTTGTT GACGTTATTC 721 ATACAAATGC AGCTCGCATC CTCTTTGAGC TTGGTGTTGG AACCATTGAT GCTTGTGGTC 781 ATCTTGACTT TTACCCAAAT GGAGGGAAGC ACATGCCAGG ATGTGAAGAC TTAATTACAC 841 CTTTACTGAA ATTTAACTTC AATGCTTACA AAAAAGAAAT GGCTTCCTTC TTTGACTGTA 901 ACCATGCCCG AAGTTATCAA TTTTATGCTG AAAGCATTCT TAATCCTGAT GCATTTATTG 961 CTTATCCTTG TAGATCCTAC ACATCTTTTA AAGCAGGAAA TTGCTTCTTT TGTTCCAAAG 1021 AAGGTTGCCC AACAATGGGT CATTTTGCTG ATAGATTTCA CTTCAAAAAT ATGAAGACTA 1081 ATGGATCACA TTATTTTTTA AACACAGGGT CCCTTTCCCC ATTTGCCCGT TGGAGGCACA 1141 AATTGTCTGT TAAACTCAGT GGAAGCGAAG TCACTCAAGG AACTGTCTTT CTTCGTGTAG 1201 GCGGGGCAAT TGGGAAAACT GGGGAGTTTG CCATTGTCAG TGGAAAACTT GAGCCAGGCA 1261 TGACTTACAC AAAATTAATC GATGCAGATG TTAACGTTGG AAACATTACA AGTGTTCAGT 1321 TCATCTGGAA AAAACATTTG TTTGAAGATT CTCAGAATAA GTTGGGAGCA GAAATGGTGA 1381 TAAATACATC TGGGAAATAT GGATATAAAT CTACCTTCTG TAGCCAAGAC ATTATGGGAC 1441 CTAATATTCT CCAGAACCTG AAACCATGCT TGCCAACTTT CTTGTACAAA GTtggcatta 1501 taagaaagca ttgcttatca atttgttgca acgaac