Construct: ORF ccsbBroadEn_09467
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006812.1_s300c1, BRDN0000395048
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMEM132D (121256)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 121256 | TMEM132D | transmembrane protein 132D | NM_133448.3 | 99.9% | 99.9% | 2492C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3366
- ORF length:
- 3297
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTGCCCGTCT GAGATGGGGA CGCTGTGGCA CCACTGGTCG CCGGTACTCA 121 TCAGCCTGGC CGCCCTGTTT TCCAAAGTGA CGGAAGGTCG AGGGATCCTT GAGAGCATCC 181 AGAGGTTTTC CTTGCTGCCC ACCTACCTCC CCGTGACCTA CCACATCAAC AACGCGGACG 241 TCTCCTTCTT CCTGAAGGAG GCCAACCAGG ATATCATGAG GAACTCCAGC CTGCAGTCCC 301 GGGTGGAGTC ATTTCTGATT TACAAATCCA GGAGGCTGCC TGTCCTCAAT GCCAGCTACG 361 GGCCTTTCTC CATCGAGCAA GTGGTGCCCC AGGATTTAAT GCTACCTTCC AACCCATTTG 421 GATTCACCAA CAAATTTTCT CTTAACTGGA AACTAAAAGC CCACATCCTG CGGGACAAAG 481 TCTACCTGAG CCGGCCCAAA GTGCAGGTTC TGTTCCACAT CATGGGCAGA GACTGGGACG 541 ACCGCAGCGC CGGGGAGAAG CTGCCGTGCC TGAGGGTCTT TGCTTTCCGA GAGACCCGAG 601 AGGTGCGGGG CAGCTGCCGG CTGCAGGGGG ACCTGGGGCT GTGCGTGGCC GAGCTGGAGC 661 TCCTGTCCAG CTGGTTCAGC CCCCCCACGG TGGTTGCCGG GAGGAGGAAG TCCGTGGACC 721 AGCCGGAGGG GACCCCCGTG GAGCTCTACT ACACCGTGCA CCCAGGGGGT GAGAGAGGGG 781 ACTGCGTCAG GGAAGACGCG AGGAGAAGCA ATGGGATCCG GACAGGCCAC AGTGACATCG 841 ATGAGTCCGG GCCCCCCTTG CAGAGGATCG GGAGCATCTT CCTTTATCAG ACACACAGGA 901 AACCCTCCCT GAGAGAACTG CGTCTGGACA ACAGCGTGGC CATCCACTAT ATACCAAAGA 961 CCGTGAGGAA AGGAGACGTG CTGACTTTTC CTGTTTCCAT CTCCAGAAAT TCCACTGAAG 1021 ATCGCTTCAC GTTGAGGGCA AAGGTGAAGA AAGGCGTGAA CATCATCGGC GTGCGAGCCA 1081 GCAGCCCTTC CATTTGGGAT GTCAAGGAGC GCACGGATTA TACTGGAAAG TATGCACCAG 1141 CTGTCATCGT TTGTCAGAAG AAAGCAGCTG GCTCAGAAAA CAGTGCGGAT GGCGCCTCCT 1201 ACGAGGTCAT GCAGATCGAT GTGGAGGTGG AAGAGCCTGG TGACCTGCCA GCCACACAGC 1261 TGGTCACGTG GCAGGTCGAG TACCCCGGAG AGATCACGTC TGACTTGGGA GTGTCCAAGA 1321 TCTATGTGAG CCCAAAGGAC TTGATTGGAG TTGTGCCGCT GGCTATGGAG GCAGAAATCC 1381 TGAACACAGC CATCCTCACG GGGAAGACGG TGGCCGTCCC GGTGAAAGTG GTCTCCGTGG 1441 AGGACGACGG CACAGTGACA GAGCTGCTGG AGTCTGTGGA GTGTAGATCG TCTGATGAAG 1501 ACGTGATTAA GGTTTCTGAC AGATGTGACT ACGTCTTTGT CAATGGGAAA GAAATGAAAG 1561 GCAAGGTCAA CGTGGTGGTG AACTTCACCT ACCAGCACCT GAGCAGCCCC CTGGAGATGA 1621 CGGTGTGGGT GCCCCGGCTT CCGCTGCAGA TCGAGGTCTC CGACACCGAG CTCAATCAGA 1681 TCAAGGGTTG GAGAGTGCCC ATCGTCTCCA GCAGGAGGCC TGCCGGGGAC AGTGAAGAGG 1741 AGGAGGATGA TGAGCGGAGG GGCCGCGGCT GCACCCTGCA GTACCAGCAC GCCATGGTGC 1801 GGGTCCTGAC GCAGTTTGTG GCTGAGGCGG CCGGCCCTGG GGGACACCTG GCCCACCTGC 1861 TGGGCTCAGA CTGGCAAGTG GACATCACGG AGCTGATAAA TGACTTCATG CAGGTGGAGG 1921 AGCCCAGGAT CGCCAAGCTG CAAGGCGGAC AGATCCTGAT GGGGCAGGAG CTTGGGATGA 1981 CCACCATTCA GATCCTGTCT CCTCTGTCAG ACACCATCCT CGCTGAAAAG ACCATCACTG 2041 TGCTGGACGA GAAGGTGACC ATCACAGACC TCGGGGTGCA GCTGGTGACA GGGCTGTCAC 2101 TCTCCTTGCA GCTCAGCCCA GGAAGCAACA GGGCCATCTT TGCCACTGCA GTGGCTCAGG 2161 AACTTCTGCA GAGGCCAAAA CAGGAAGCAG CCATCAGTTG CTGGGTCCAG TTCAGTGATG 2221 GCTCAGTCAC GCCCTTGGAT ATTTACGATG GGAAAGACTT CTCCTTGATG GCCACATCTT 2281 TGGATGAGAA GGTAGTCTCC ATCCACCAAG ACCCCAAATT CAAGTGGCCT ATCATTGCTG 2341 CGGAAACAGA AGGACAAGGC ACCCTGGTCA AGGTGGAAAT GGTTATTAGT GAATCCTGCC 2401 AGAAATCCAA GCGGAAGAGT GTGTTAGCTG TTGGAACGGC AAACATCAAA GTTAAATTTG 2461 GCCAAAACGA TGCTAACCCC AACACCAGTG ACAGCAGACA CACAGGGGCA GGGGTTCACA 2521 TGGAAAACAA TGTCAGTGAC AGAAGGCCCA AAAAACCCTT GCAGGAATGG GGGAGTCAGG 2581 AAGGACAGTA CTATGGCAGT TCTTCTATGG GACTCATGGA GGGACGGGGC ACCACGACAG 2641 ACAGGTCCAT CCTGCAGAAG AAGAAAGGCC AGGAAAGCCT TTTAGATGAC AACAGCCACT 2701 TGCAGACCAT CCCCAGCGAC CTCACCAGCT TCCCAGCCCA GGTGGACCTC CCCAGAAGCA 2761 ATGGGGAAAT GGATGGGAAT GACCTTATGC AGGCATCCAA AGGGCTGAGC GACTTAGAAA 2821 TTGGGATGTA TGCTTTGTTG GGAGTCTTCT GTTTGGCCAT TTTGGTCTTC TTGATAAACT 2881 GTGTGACCTT TGCATTAAAA TACAGACACA AACAGGTTCC CTTCGAGGAG CAGGAAGGGA 2941 TGAGTCACTC TCATGACTGG GTTGGGTTAA GCAACCGGAC AGAGCTGTTG GAGAATCACA 3001 TCAACTTTGC CTCCTCGCAA GATGAGCAAA TCACTGCCAT TGACAGGGGC ATGGATTTCG 3061 AGGAAAGTAA ATATCTCCTC AGCACAAACT CCCAAAAAAG CATCAATGGG CAGCTGTTCA 3121 AACCTTTGGG ACCCATCATC ATTGATGGGA AAGATCAGAA AAGTGAGCCC CCAACATCCC 3181 CTACCTCAAA AAGGAAAAGG GTAAAATTTA CCACCTTCAC CGCCGTCTCC TCAGACGACG 3241 AGTACCCCAC CAGGAACTCC ATCGTGATGA GTAGCGAGGA TGACATTAAG TGGGTCTGCC 3301 AGGATCTGGA CCCTGGGGAC TGCAAAGAGC TGCACAACTA CATGGAGAGG TTACATGAAA 3361 ATGTGTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 3421 gttgcaacga ac