Construct: ORF ccsbBroadEn_09482
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005929.1_s300c1, BRDN0000397241
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX20 (124460)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 124460 | SNX20 | sorting nexin 20 | NM_001144972.2 | 99.6% | 99% | 104C>T |
| 2 | human | 124460 | SNX20 | sorting nexin 20 | NM_153337.3 | 77.5% | 74.8% | (many diffs) |
| 3 | human | 124460 | SNX20 | sorting nexin 20 | NM_182854.4 | 31.4% | 29.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 372
- ORF length:
- 306
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AAGTCCAGAG CACCCTGGGA GCCCTGGCTG CATGGGACCC ATAACCCAGT 121 GCACGGCAAG GACCCAGCAG GAAGCACCAG CCACTGGCCC CGACCTCCTG CACCCAGGAC 181 CTGACGGGCA CTTAGACACA CACAGTGGCC TGAGCTCCAA CTCCAGCATG ACCACGCGGG 241 AGCTTCAGCA GTACTGGCAG AACCAGAAAT GCCGCTGGAA GCACGTCAAA CTGCTCTTTG 301 AGATCGCTTC AGCTCGCATC GAGGAGAGAA AAGTCTCTAA GTTTGTGGCT CCGGCTCCTG 361 ACGCCACACC CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 421 caatttgttg caacgaac