Construct: ORF ccsbBroadEn_09484
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000261.1_s300c1, BRDN0000393481
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD300LB (124599)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 124599 | CD300LB | CD300 molecule like family ... | NM_174892.4 | 84.4% | 84.4% | 0_1ins111 |
| 2 | human | 124599 | CD300LB | CD300 molecule like family ... | XM_005257027.3 | 82.7% | 75.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 780
- ORF length:
- 714
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CAGAAGGTGC AAGCCAGAGC TCGGGCAGAA CTTCCAGAGT GCATCTGGGA 121 TCTGCATTTG CCACTGGTTG CAGATCAGGC GGACGAGGAG CCGGGAAGGC AGAGCCATGT 181 GGCTGCCCCC TGCTCTGCTC CTTCTCAGCC TCTCAGGCTG TTTCTCCATC CAAGGCCCAG 241 AGTCTGTGAG AGCCCCAGAG CAGGGGTCCC TGACGGTTCA ATGCCACTAT AAGCAAGGAT 301 GGGAGACCTA CATTAAGTGG TGGTGCCGAG GGGTGCGCTG GGATACATGC AAGATCCTCA 361 TTGAAACCAG AGGGTCGGAG CAAGGAGAGA AGAGTGACCG TGTGTCCATC AAGGACAATC 421 AGAAAGACCG CACGTTCACT GTGACCATGG AGGGGCTCAG GCGAGATGAC GCAGATGTTT 481 ACTGGTGTGG GATTGAAAGA AGAGGACCTG ACCTTGGGAC TCAAGTGAAA GTGATCGTTG 541 ACCCAGAGGG AGCGGCTTCC ACAACAGCAA GCTCACCTAC CAACAGCAAT ATGGCAGTGT 601 TCATCGGCTC CCACAAGAGG AACCACTACA TGCTCCTGGT ATTTGTGAAG GTGCCCATCT 661 TGCTCATCTT GGTCACTGCC ATCCTCTGGT TGAAGGGGTC TCAGAGGGTC CCTGAGGAGC 721 CAGGGGAACA GCCTATCTAC ATGAACTTCT CCGAACCTCT GACTAAAGAC ATGGCCACTT 781 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 841 acgaac