Construct: ORF ccsbBroadEn_09504
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008289.1_s300c1, BRDN0000398504
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MAB21L3 (126868)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 126868 | MAB21L3 | mab-21 like 3 | NM_152367.2 | 99.9% | 100% | 669A>G |
| 2 | human | 126868 | MAB21L3 | mab-21 like 3 | XM_011540623.2 | 99.9% | 100% | 669A>G |
| 3 | human | 126868 | MAB21L3 | mab-21 like 3 | XM_011540625.2 | 99.9% | 100% | 669A>G |
| 4 | human | 126868 | MAB21L3 | mab-21 like 3 | XM_011540626.2 | 99.9% | 100% | 669A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1155
- ORF length:
- 1086
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAATACCTT ACTGTGGGAG ACTTAGAAGA TTGCCTACTG AATAAGGTGG 121 ACTTGAGGCG CCAGCAGATT TCCCAGGCTG TGGAGGAGGT GCAGAAAGTC GTTCATCATT 181 TGACCACAAA CATCAGCAAC CAAGACATTA GATTTCAAGC TGTGCCTTAC TCTGACACGT 241 ACAATGAAAA TATTAAGGTT TTGGCTCCCA GTCAGTTCCT CGTCACAGTC CCAATAAAAG 301 GCCTGGCCGG GTACAGGGAG GCCAGGGAGC AGCACTGGCG GTACTACACA CTGCAGGGCA 361 CCAGGCTGCC CTGCCCGTTG CGGGACCCTG AGGGTCTGCA GCAGTGGCTG GAGGTGGAAC 421 AGTTTATGAA GAGCCTGTGG CAGTGGCATG AGACAGATGT GAACATCGAC GGAGACATTG 481 TGCCTGCCAA GGTCCTCCTA GTGTTCCGGA AGCTGGTGGA AAATGCAGTT AGAACCTGTC 541 ACCTCTCAGG TAAGGTCAGC CTGCTAGGAA ACCGCTCTGC AGTTTGGGTT GCTGTGGAAA 601 CATCTGCATA TCAGGTGGAA CTGGAGCTGG TCCCCGCAGT GGAGATCCCC ACCACCTGGT 661 CCAAGAAAGC CCGGTGGCCT CGATGTCTGC AGCGCTGGCC TTCCCAAGAG AGAGTGGAGT 721 GCATCAAGTC GTTTGGGTTT AACTTGTTGG CCTGTTCAAA TTATCACTGG CAGCTGAGCT 781 TCCTCCGTGC TGAGCAGGTG TTACTGGAAC AGCTGGATGA AGATGGGGGC TGCCGTAGGA 841 AGTGTTTTCA GGTCATGAGG CACCTGAAGG AGGACATCTG GTGCCCAGGG AACAGGCCGG 901 TTATCACGTC CCACCATCTG CAGACTGTGC TCTTTTGGAC CTGCGAGAAA TATCCCCACT 961 TTAAAGACTG GCAGGTCTTC AGCAAAGCAT TTCTGCGCCT GGTGAGGAAA CTGCACAAGT 1021 GCGTGAGCCA GCACTTCCTG AAACACTATT TCGTCCGGAA CAGCAACCTC TTTCAGTGCA 1081 CCAACCCGAC TGAACTGGAC ACTGTGGCCC AAAAGCTGGC CACCTTCCTG AAGAACCCCC 1141 AGATCGGCCC GCCCTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1201 tatcaatttg ttgcaacgaa c