Construct: ORF ccsbBroadEn_09516
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005854.1_s300c1, BRDN0000398569
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSTL1 (128817)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 128817 | CSTL1 | cystatin like 1 | NM_138283.1 | 99.7% | 99.3% | 262T>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 504
- ORF length:
- 435
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGGATCGGA TGCTGGAGAA ACCCCCTGCT GCTGCTGATT GCCCTGGTCC 121 TGTCAGCCAA GCTGGGTCAC TTCCAAAGGT GGGAGGGCTT CCAGCAGAAG CTCATGAGCA 181 AGAAGAACAT GAATTCAACA CTCAACTTCT TCATTCAATC CTACAACAAT GCCAGCAACG 241 ACACCTACTT ATATCGAGTC CAGAGGCTAA TTCGAAGTCA GATGCAGCTG ACGACGGGAG 301 TGGAGTATAT AGTCACTGTG AAGATTGGCC GGACCAAATG CAAGAGGAAT GACACGAGCA 361 ATTCTTCCTG CCCCCTGCAA AGCAAGAAGC TGAGAAAGAG TTTAATTTGC GAGTCTTTGA 421 TATACACCAT GCCCTGGATA AACTATTTCC AGCTCTGGAA CAATTCCTGT CTGGAGGCCG 481 AGCATGTGGG CAGAAACCTC AGATTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa 541 agcattgctt atcaatttgt tgcaacgaac