Construct: ORF ccsbBroadEn_09539
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004204.1_s300c1, BRDN0000455321
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMEM155 (132332)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 132332 | TMEM155 | transmembrane protein 155 | NM_001317837.2 | 99.7% | 99.2% | 32C>T |
| 2 | human | 132332 | TMEM155 | transmembrane protein 155 | NM_001317838.2 | 99.7% | 99.2% | 32C>T |
| 3 | human | 132332 | TMEM155 | transmembrane protein 155 | NM_001317839.2 | 99.7% | 99.2% | 32C>T |
| 4 | human | 132332 | TMEM155 | transmembrane protein 155 | NM_001369019.1 | 99.7% | 99.2% | 32C>T |
| 5 | human | 132332 | TMEM155 | transmembrane protein 155 | NM_152399.4 | 99.7% | 99.2% | 32C>T |
| 6 | human | 132332 | TMEM155 | transmembrane protein 155 | XM_005262737.3 | 99.7% | 99.2% | 32C>T |
| 7 | human | 132332 | TMEM155 | transmembrane protein 155 | NM_001317841.2 | 80% | 80% | 0_1ins78 |
| 8 | human | 132332 | TMEM155 | transmembrane protein 155 | NM_001317842.2 | 80% | 80% | 0_1ins78 |
| 9 | human | 132332 | TMEM155 | transmembrane protein 155 | XM_017007726.1 | 80% | 80% | 0_1ins78 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 459
- ORF length:
- 390
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTTCAGAT CTTATCAGGA CAATCTTGGT TGTTGCACTA ATTTCCAAAC 121 TTGGCACAGC TGTAGATGCA GAACTGATGC CATCTGGTGC GATTCTACAG AATAAGAGAG 181 AAAATTTACC CAGAGTGTGC CATGCACTGG CTTTTCTGGG AATGGCAAGG TGCCAGGATT 241 TGTTTTTGGT TCGCTTGCAG GGGTGGAAAC TTGGAACTAG GTTCCAAGAT GGTCCCCGCA 301 GCACCCCACA AGAAGAAGGA GGAAGCCCAC AGAGAAAACG GGGCATGCCA GTTCAAATCC 361 ACTTCCTTTT AAAGAGCTTC CTCAGCAGCC CAATAACTTT TGCCTTCATC TCATTGGCCA 421 GAACTGTGTC ATTGGCTACT GCTATCTGCA AGATTGTCTT GCCAACTTTC TTGTACAAAG 481 TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac