Construct: ORF ccsbBroadEn_09541
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011636.1_s300c1, BRDN0000455276
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM241A (132720)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 132720 | FAM241A | family with sequence simila... | NM_152400.3 | 99.2% | 97.7% | 95G>A;116C>A;137C>A |
| 2 | mouse | 70617 | 5730508B09Rik | RIKEN cDNA 5730508B09 gene | NM_027482.3 | 82.5% | 75.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 462
- ORF length:
- 396
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CTCAGCCGGG GAGCTGCTGC GGGGCGGCGA CGGCGGGGAA CGCGACGAGG 121 ACGGGGACGC GCTGGCGGAG CGGGAGGCGG CAGGGACCGA GTGGGATCCC GGGGCGAGCC 181 AGCGGCGGCG CGGACAGCGG CAGAAGGAGA GCGAGCAGGA TGTTGAAGAC TCACAGAACC 241 ACACTGGTGA GCCGGTTGGA GATGACTACA AGAAAATGGG AACACTTTTT GGTGAACTGA 301 ACAAAAACCT TATCAACATG GGCTTCACAA GGATGTATTT TGGAGAACGA ATAGTGGAAC 361 CAGTAATAGT CATTTTCTTT TGGGTTATGC TGTGGTTCCT TGGCCTGCAA GCCCTTGGAC 421 TAGTTGCTGT TCTTTGCCTT GTTATTATTT ATGTGCAACA GTACCCAACT TTCTTGTACA 481 AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac