Transcript: Human NM_152400.3

Homo sapiens family with sequence similarity 241 member A (FAM241A), mRNA.

Source:
NCBI, updated 2019-08-02
Taxon:
Homo sapiens (human)
Gene:
FAM241A (132720)
Length:
8844
CDS:
128..526

Additional Resources:

NCBI RefSeq record:
NM_152400.3
NBCI Gene record:
FAM241A (132720)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_152400.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000122183 GCCTTTATGAACTCAGTATAA pLKO.1 2155 3UTR 100% 13.200 18.480 N FAM241A n/a
2 TRCN0000122012 GAACGAATAGTGGAACCAGTA pLKO.1 407 CDS 100% 4.050 5.670 N FAM241A n/a
3 TRCN0000121795 CCCACCAAATAATCTCATATT pLKO.1 968 3UTR 100% 13.200 9.240 N FAM241A n/a
4 TRCN0000145456 GAATAGTGGAACCAGTAATAG pLKO.1 411 CDS 100% 13.200 9.240 N FAM241A n/a
5 TRCN0000144671 GCATTCTTAGTGTCTTCTCAT pLKO.1 1938 3UTR 100% 4.950 3.465 N FAM241A n/a
6 TRCN0000142690 CAGGATGTTGAAGACTCACAG pLKO.1 278 CDS 100% 4.050 2.835 N FAM241A n/a
7 TRCN0000122115 CTTATCAACATGGGCTTCACA pLKO.1 371 CDS 100% 3.000 2.100 N FAM241A n/a
8 TRCN0000142171 GTTGAAGACTCACAGAACCAC pLKO.1 284 CDS 100% 2.640 1.848 N FAM241A n/a
9 TRCN0000143096 CTTGGACTAGTTGCTGTTCTT pLKO.1 476 CDS 100% 0.000 0.000 N FAM241A n/a
10 TRCN0000142974 CTAGTTGCTGTTCTTTGCCTT pLKO.1 482 CDS 100% 0.000 0.000 N FAM241A n/a
11 TRCN0000148774 CCATGTGTTCTCATTGTTCAA pLKO.1 6135 3UTR 100% 4.950 2.475 Y GLIPR1L2 n/a
12 TRCN0000162188 CCATGTGTTCTCATTGTTCAA pLKO.1 6135 3UTR 100% 4.950 2.475 Y SPC25 n/a
13 TRCN0000166463 CCTGTGTCCATGTGTTCTCAT pLKO.1 6128 3UTR 100% 4.950 2.475 Y SPC25 n/a
14 TRCN0000138391 CGCCTGTAATCCTAGCACTTT pLKO.1 2711 3UTR 100% 4.950 2.475 Y DENND6A n/a
15 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 8617 3UTR 100% 5.625 2.813 Y KLHL30 n/a
16 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 8617 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_152400.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09541 pDONR223 100% 99.2% 97.7% None 95G>A;116C>A;137C>A n/a
2 ccsbBroad304_09541 pLX_304 0% 99.2% 97.7% V5 95G>A;116C>A;137C>A n/a
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